PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0319s00040.1 | ||||||||
Common Name | LR48_Vigan07g164500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | LBD | ||||||||
Protein Properties | Length: 162aa MW: 17806.3 Da PI: 7.5033 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 47 | 7.5e-15 | 15 | 64 | 1 | 49 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkal 49 +C aCk+lrrkC+k+C++apyf ++q +++fa+vhk+ + l +++a Vang0319s00040.1 15 PCGACKFLRRKCVKSCIFAPYFDSDQgTAHFAAVHKVMNLQAELTYVQAR 64 7***********************9989*********9888777666654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 11.015 | 14 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.1E-13 | 15 | 63 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MDYGGKIGGS ERGGPCGACK FLRRKCVKSC IFAPYFDSDQ GTAHFAAVHK VMNLQAELTY 60 VQARLATMQR MPMAVAPLPH PQSSSPQTLP SSDHLASNAE MQSVPMMQYD PLQPHSASLE 120 LSSILFNQSD QQLEDRELQT LAREFVTKYL PGVRFQQSNS P* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0319s00040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017430440.1 | 1e-108 | PREDICTED: LOB domain-containing protein 19 | ||||
TrEMBL | A0A0L9UZ39 | 1e-106 | A0A0L9UZ39_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SY93 | 1e-106 | A0A0S3SY93_PHAAN; Uncharacterized protein | ||||
STRING | XP_007134896.1 | 1e-100 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1771 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00210.1 | 1e-26 | LOB domain-containing protein 31 |
Publications ? help Back to Top | |||
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