PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0318s00160.1
Common NameLR48_Vigan231s000100
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 425aa    MW: 46700.6 Da    PI: 8.4571
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0318s00160.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.12.5e-30205262258
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                       +Dg++WrKYGqK+ kg+++pr+YYrC++  gCpv+k+v+rsaed++v+++tYeg+Hnh
  Vang0318s00160.1 205 SDGCQWRKYGQKMAKGNPCPRAYYRCSMGtGCPVRKQVQRSAEDQSVLITTYEGQHNH 262
                       7***************************98**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-32189264IPR003657WRKY domain
PROSITE profilePS5081129.379199265IPR003657WRKY domain
SuperFamilySSF1182908.63E-27201265IPR003657WRKY domain
SMARTSM007741.3E-36204264IPR003657WRKY domain
PfamPF031065.9E-27206262IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MLARNFVVYP LKNINDQETS LDLLTKTSPT NRSTVGEGSS EARGNERDNK FAAMLAELHH  60
MNAENQRLRD EVDKVNDKYH ALHNQLIKQI EKQRKNEGKK ADMIPRPFLD IGVAMKEENS  120
QQYSKGKLQE GKNMIDLIES KKQKIYTNKD VTELETSEKA IPRWLSNEVS RSSSFKDVDE  180
ASETMSMIKK ARVSVRARSV SSMISDGCQW RKYGQKMAKG NPCPRAYYRC SMGTGCPVRK  240
QVQRSAEDQS VLITTYEGQH NHVLPPAAKP MASTTSAAAS MLLSGSMPSS DGLLHPNILE  300
SATLPFSHNL ATLSASAPFP TITLDLTQTP TNNINTSSQQ DPPQDYQLSL LSPLLAPNFF  360
HQSKLSTLHA SQGTETASFA DTVNAATAAI TTDPKFSAAL MAAITSIIGS SHPVETQHCN  420
NKQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-24191267176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0318s00160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017406166.10.0PREDICTED: probable WRKY transcription factor 31
TrEMBLA0A0L9T6Y00.0A0A0L9T6Y0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RU330.0A0A0S3RU33_PHAAN; Uncharacterized protein
STRINGXP_007146514.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139131222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-69WRKY family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]