PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0306s00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB | ||||||||
Protein Properties | Length: 583aa MW: 64017.2 Da PI: 6.4177 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.2 | 6.8e-17 | 64 | 111 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed++lvd+v++ G g+W+++ ++ g+ R++k+c++rw ++l Vang0306s00040.1 64 KGPWTSTEDDILVDYVNKNGEGNWNAVQKHTGLLRCGKSCRLRWANHL 111 79******************************99**********9986 PP | |||||||
2 | Myb_DNA-binding | 48.3 | 2.3e-15 | 117 | 160 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ ++++++++G++ W++ a++++ gRt++++k++w++ Vang0306s00040.1 117 KGAFTAEEERFIAELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 160 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.935 | 59 | 111 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.24E-29 | 63 | 158 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-13 | 63 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-15 | 64 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-22 | 65 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.35E-10 | 66 | 111 | No hit | No description |
PROSITE profile | PS51294 | 24.53 | 112 | 166 | IPR017930 | Myb domain |
SMART | SM00717 | 8.5E-16 | 116 | 164 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-14 | 117 | 160 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-24 | 118 | 165 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.64E-11 | 119 | 160 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045926 | Biological Process | negative regulation of growth | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 583 aa Download sequence Send to blast |
LALLYSPRAK RVVLDSSVAS RRIIKYKMGR VNNEIEDEVL PSDVSAAQSN GESYEGSTSV 60 VLKKGPWTST EDDILVDYVN KNGEGNWNAV QKHTGLLRCG KSCRLRWANH LRPNLKKGAF 120 TAEEERFIAE LHAKMGNKWA RMAAHLPGRT DNEIKNYWNT RIKRRQRAGL PLYPPEVSLQ 180 GFQESQRNQS NGGLNGGNRM HLDMLQKNSY EIHGAIFDSL KDNQGILPYA PKFSDVSVCG 240 NMLKGLDSSS QYCSVMPPAS PKNKRLREST IPFNGSKDKK NNGLYPFCQN RDNNSDKIAH 300 SFGMQALLDP GPSSHNSMCF SHSLSNGNSS TSKPTFEAVK LELPSLQYPE LHLGSWGTSP 360 PPPMLESVDD FFQSHTPIST LESDCSSPQN SGLLDALLYQ AKTLSSSRNH CSDKGSNSST 420 ATPGDRGDNS ALNVYETEWE DYADPVSPFG ATSILNECPA LIGSENSLDE QLSLQTFTGN 480 IPKLEFVDQV WTPDNENQTL SFLNITRPDL LFASDWHELG FGHGKNQAIT TDTTTTLLGD 540 DFAADHKHMT SGTSQSSQVW GFGSCASAAN NMHALCHLSD LG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-30 | 62 | 165 | 5 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00348 | DAP | Transfer from AT3G11440 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0306s00040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017431637.1 | 0.0 | PREDICTED: transcription factor GAMYB-like | ||||
Refseq | XP_017431638.1 | 0.0 | PREDICTED: transcription factor GAMYB-like | ||||
Refseq | XP_017431639.1 | 0.0 | PREDICTED: transcription factor GAMYB-like | ||||
Refseq | XP_017431640.1 | 0.0 | PREDICTED: transcription factor GAMYB-like | ||||
TrEMBL | A0A0S3SAG6 | 0.0 | A0A0S3SAG6_PHAAN; Uncharacterized protein | ||||
STRING | XP_007133583.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2047 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11440.1 | 1e-111 | myb domain protein 65 |