PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang02g14810.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NAC

Protein Properties

Length: 336aa MW: 38264.7 Da PI: 5.7856

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang02g14810.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181	3e-56	23	149	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL +kv ++ + ++i e+d++k+ePwdLp ++k +ekewyfFs rd+ky+tg+r+nrat +gyWkatgkdke+++ Vang02g14810.1 23 LPPGFRFHPTDEELITHYLSQKVLDNCFCS-RAIGEADLNKCEPWDLPCMAKMGEKEWYFFSVRDRKYPTGQRTNRATGAGYWKATGKDKEIYK- 115 79**********************9877.89***********8888899***********************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++l+g+kktLvfykgrap+gekt+Wvmheyrle Vang02g14810.1 116 AKKLIGMKKTLVFYKGRAPSGEKTNWVMHEYRLE 149 999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-63	16	173	IPR003441	NAC domain
PROSITE profile	PS51005	59.279	23	173	IPR003441	NAC domain
Pfam	PF02365	5.6E-30	24	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
LMDAMENYYY SQRDTMAEEA FDLPPGFRFH PTDEELITHY LSQKVLDNCF CSRAIGEADL 60 NKCEPWDLPC MAKMGEKEWY FFSVRDRKYP TGQRTNRATG AGYWKATGKD KEIYKAKKLI 120 GMKKTLVFYK GRAPSGEKTN WVMHEYRLED DHSMHNPHKK AMNDWAICRI FEKTNCGKKM 180 QISGLVRLSS FGKEMPSLMD SSQYNTSEAK PVLGESSHLS SDRNQSDENI AESLETLMMA 240 SSSSYSSNPF DVSPASWSVP HQSLQAGNSN YSMDEEQQSM LGMLIENHGS STTLRTHKAL 300 DNDFDADTSS LIYNDEIFHR SFGNQEYSSP SLWGF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-56	21	179	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-56	21	179	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-56	21	179	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-56	21	179	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	9e-57	21	179	18	174	NAC domain-containing protein 19
3swm_B	9e-57	21	179	18	174	NAC domain-containing protein 19
3swm_C	9e-57	21	179	18	174	NAC domain-containing protein 19
3swm_D	9e-57	21	179	18	174	NAC domain-containing protein 19
3swp_A	9e-57	21	179	18	174	NAC domain-containing protein 19
3swp_B	9e-57	21	179	18	174	NAC domain-containing protein 19
3swp_C	9e-57	21	179	18	174	NAC domain-containing protein 19
3swp_D	9e-57	21	179	18	174	NAC domain-containing protein 19
4dul_A	1e-56	21	179	15	171	NAC domain-containing protein 19
4dul_B	1e-56	21	179	15	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang02g14810.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017439194.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Refseq	XP_017439195.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-105	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A0S3T7P1	0.0	A0A0S3T7P1_PHAAN; Uncharacterized protein
STRING	XP_007151241.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-106	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]