PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang02g14320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 395aa MW: 44440.8 Da PI: 6.0249 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 95.6 | 7.9e-30 | 36 | 177 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........t 78 p+G++F+P+d el+ ++L++k+ k + +++i++++ i++++P++Lp ++++ ++++fF+k+ ++yatg+rk+r+ Vang02g14320.1 36 PVGLKFDPSDVELL-KHLEAKCCVGKreqhvfI--HKFIPTLEgeqgICYTHPENLP-GARKDGNSVHFFHKTVNAYATGRRKRRKihhqdglsE 126 89************.889999765553555331..223443322333**********.55667899*******************8577766665 PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ +W++tg++k+v++ +g ++g kk++v+y ++ +k+ kt+Wvmh+y+l Vang02g14320.1 127 EHVRWHKTGRTKSVIE-DGVHKGFKKIMVLYvrPKEGSKTYKTNWVMHQYHL 177 5899************.999***********54345566679********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.93E-35 | 20 | 196 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.139 | 35 | 196 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-12 | 36 | 177 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MSAADQMKNC ETYRECPKCH YHTNNIDVSD EWPGFPVGLK FDPSDVELLK HLEAKCCVGK 60 REQHVFIHKF IPTLEGEQGI CYTHPENLPG ARKDGNSVHF FHKTVNAYAT GRRKRRKIHH 120 QDGLSEEHVR WHKTGRTKSV IEDGVHKGFK KIMVLYVRPK EGSKTYKTNW VMHQYHLGSE 180 EEEKNGEYVV SKIFYQQQKH SEKNEENTVV EDSNIAAQTG PSTPKPNPPT RPCTGKCDDN 240 FDENELLSFI QDAKPIPGEL LAPPSDVLDE DIKVDPAWLA DESQADCDFH GLEEILSMSD 300 SSALFNHSGL PSTLNSTANN MVAPGNNDDY ASSGVSVLDT LEIDTPSDFD LCVSISSSFK 360 ILQYYWKVRI CNLALKTAPF TGWTSYKMLL ISNS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang02g14320.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015643 | 0.0 | AP015643.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_0599, complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017439422.1 | 0.0 | PREDICTED: NAC domain-containing protein 10-like | ||||
Swissprot | Q6NQK2 | 5e-74 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A0L9VQ06 | 0.0 | A0A0L9VQ06_PHAAN; Uncharacterized protein | ||||
STRING | XP_007150911.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7572 | 30 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 2e-75 | NAC family protein |