PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang02g13960.1 | ||||||||
Common Name | LR48_Vigan10g281700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | LBD | ||||||||
Protein Properties | Length: 167aa MW: 18336.5 Da PI: 6.7454 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 140.7 | 4.9e-44 | 11 | 109 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC +dC++apyfp e+p+kfanvhk+FGasnv+k+l+++++ +reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el+ Vang02g13960.1 11 PCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKILNEVQPYQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVLKLQKELD 105 7*********************************************************************************************9 PP DUF260 96 llke 99 ++++ Vang02g13960.1 106 ATNA 109 9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.73 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.3E-44 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MMASSSYSNS PCAACKFLRR KCMPDCIFAP YFPPEEPQKF ANVHKIFGAS NVSKILNEVQ 60 PYQREDAVNS LAYEAEARIK DPVYGCVGAI SVLQRQVLKL QKELDATNAD LIRYSTCSEM 120 PNRRSKMSSD DGGGGDGGSS HGLSFYYSSA NWNNDHSENG YPRGDI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-65 | 8 | 120 | 8 | 119 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-65 | 8 | 120 | 8 | 119 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang02g13960.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017439405.1 | 1e-106 | PREDICTED: LOB domain-containing protein 25 | ||||
Refseq | XP_017439406.1 | 1e-106 | PREDICTED: LOB domain-containing protein 25 | ||||
Swissprot | Q8L8Q3 | 5e-69 | LBD25_ARATH; LOB domain-containing protein 25 | ||||
TrEMBL | A0A0L9VPF2 | 1e-105 | A0A0L9VPF2_PHAAN; Uncharacterized protein | ||||
STRING | XP_007143908.1 | 1e-97 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 3e-71 | LOB domain-containing protein 25 |
Publications ? help Back to Top | |||
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