PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g13960.1
Common NameLR48_Vigan10g281700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 167aa    MW: 18336.5 Da    PI: 6.7454
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g13960.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260140.74.9e-4411109199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrrkC +dC++apyfp e+p+kfanvhk+FGasnv+k+l+++++ +reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el+
  Vang02g13960.1  11 PCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKILNEVQPYQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVLKLQKELD 105
                     7*********************************************************************************************9 PP

          DUF260  96 llke 99 
                     ++++
  Vang02g13960.1 106 ATNA 109
                     9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.7310111IPR004883Lateral organ boundaries, LOB
PfamPF031956.3E-4411108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MMASSSYSNS PCAACKFLRR KCMPDCIFAP YFPPEEPQKF ANVHKIFGAS NVSKILNEVQ  60
PYQREDAVNS LAYEAEARIK DPVYGCVGAI SVLQRQVLKL QKELDATNAD LIRYSTCSEM  120
PNRRSKMSSD DGGGGDGGSS HGLSFYYSSA NWNNDHSENG YPRGDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-6581208119LOB family transfactor Ramosa2.1
5ly0_B8e-6581208119LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g13960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017439405.11e-106PREDICTED: LOB domain-containing protein 25
RefseqXP_017439406.11e-106PREDICTED: LOB domain-containing protein 25
SwissprotQ8L8Q35e-69LBD25_ARATH; LOB domain-containing protein 25
TrEMBLA0A0L9VPF21e-105A0A0L9VPF2_PHAAN; Uncharacterized protein
STRINGXP_007143908.11e-97(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.13e-71LOB domain-containing protein 25
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  2. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]