PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g12700.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Dof
Protein Properties Length: 517aa    MW: 56843.8 Da    PI: 7.0648
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g12700.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.34.1e-39144203261
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                     ++k+l+cprC+s +tkfCy+nny+++qPryfCk+C+ryWt+GG++rnvPvG+grrknk+ 
  Vang02g12700.1 144 PDKILHCPRCNSLDTKFCYFNNYNVNQPRYFCKNCQRYWTAGGTMRNVPVGAGRRKNKHL 203
                     7899******************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-27141201IPR003851Zinc finger, Dof-type
PfamPF027017.5E-32146202IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.286148202IPR003851Zinc finger, Dof-type
PROSITE patternPS013610150186IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
LFYLYLCILE LLRSFILFLW KKNHSTTVPL INTEGDMSNK DPGIRLFGRK IPLPESQIPA  60
SSQMGYQIQA NSATMNAYNG LKKKEVEMPC TENSEQLENY SDSTDSKQET LYNRQENESK  120
VNSKTVENNT ESSSTDQDKI FKKPDKILHC PRCNSLDTKF CYFNNYNVNQ PRYFCKNCQR  180
YWTAGGTMRN VPVGAGRRKN KHLASQYRHI IVSCDGIPTT SDSSCHQLAT TLQSAAVFRS  240
STDNGTVLKF CPDAPPLYES MESMLNLKEQ NRSADENTVN YAEKGEEEVS LCGSSSMTNA  300
YTPRNKSTEP TASKPMQCYP VPPWIFPWNP DWNNVASTAS LHPSSLQMCN PYNSADPASM  360
QWCPTPIMAV PTICPPSFPL QFVPGSYWSG PPVYGGGTGA ASMGFNACLS PTSSTSNSCC  420
SGNGSPTLGK HTRDNLSTDE EKSDMCILVP TTLRIDDPNG ASKLASSGTN PECVPEGTIS  480
KRAKPREGKD RVLGVSQILE ANPAAISRAH AFQEGM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g12700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017437627.10.0PREDICTED: cyclic dof factor 1-like isoform X1
TrEMBLA0A0L9VMI80.0A0A0L9VMI8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T8T90.0A0A0S3T8T9_PHAAN; Uncharacterized protein
STRINGXP_007151521.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35023165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.25e-55cycling DOF factor 2