PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang02g12500.1 | ||||||||
Common Name | LR48_Vigan10g220100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | GeBP | ||||||||
Protein Properties | Length: 379aa MW: 42568 Da PI: 9.448 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 105.8 | 3.3e-33 | 162 | 257 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 lfqr+wseeDe+ +L+G+++f +ktg++++ +daf++f+kks++++vs++ql eKirr+KkKf+++++k+k+g p++ ++hd+ ++elskkiW Vang02g12500.1 162 LFQRIWSEEDEVGILKGILEFISKTGQEAYRYVDAFHNFIKKSLHVEVSSHQLKEKIRRMKKKFETREAKKKKGIWPRLLRPHDRAVYELSKKIW 256 69********************************************************************************************* PP DUF573 97 g 97 g Vang02g12500.1 257 G 257 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 5.5E-30 | 163 | 257 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MTKKPKQRPA PVEDPSTASS SESEEDDDRP HSSQQHAAAP QVSSSEEEDD SSEEDEKKLS 60 TLPASANHPS KPHPKSYSSE SEPDTDSEPA RVKPKPKPTD LPQPKVQAQR SSTPVKPGSK 120 RPAHVTEPKR AKKKPAEAPS PSVANDETEE DGKKSGGQTR VLFQRIWSEE DEVGILKGIL 180 EFISKTGQEA YRYVDAFHNF IKKSLHVEVS SHQLKEKIRR MKKKFETREA KKKKGIWPRL 240 LRPHDRAVYE LSKKIWGEWP NGLVEKPKPL AKYVTKTQKK ESKAEDKVPS QPSAPLLALP 300 APESCDVSLL YSSISCFKEL DEDEMKRGLT LIGESKRKEL ERRWKVLQYS EMELLANRSL 360 LIGEQIKLVS EALQSSNN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 134 | PKRAKKKP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang02g12500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017437514.1 | 0.0 | PREDICTED: mediator-associated protein 1-like | ||||
TrEMBL | A0A0L9VNI1 | 0.0 | A0A0L9VNI1_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3T8S5 | 0.0 | A0A0S3T8S5_PHAAN; Uncharacterized protein | ||||
STRING | XP_007151503.1 | 1e-148 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 6e-21 | DNA-binding storekeeper protein-related transcriptional regulator |
Publications ? help Back to Top | |||
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