PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang02g11990.1 | ||||||||
Common Name | LR48_Vigan10g196500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | LBD | ||||||||
Protein Properties | Length: 148aa MW: 15603.6 Da PI: 8.7715 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.5 | 5.2e-39 | 48 | 147 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC +C++ap+f +q ++kfa+vhk+FGasnv+kll+++p ++r++a++++ yeA+ar++dPvyG+v++il+lqqq+++l+ael Vang02g11990.1 48 PCGACKFLRRKCIGGCIFAPHFGTDQgAAKFAAVHKVFGASNVSKLLSNIPANRRQEAATTISYEAQARLSDPVYGCVSTILALQQQVASLQAEL 142 7***********************9989******************************************************************* PP DUF260 95 allke 99 a+l++ Vang02g11990.1 143 AMLQT 147 *9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.206 | 47 | 148 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-39 | 48 | 146 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:1900150 | Biological Process | regulation of defense response to fungus |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MEDAQARNSN DGDDNGGSGS KRKGPVLRRA MATQTQDEAM VGSSPATPCG ACKFLRRKCI 60 GGCIFAPHFG TDQGAAKFAA VHKVFGASNV SKLLSNIPAN RRQEAATTIS YEAQARLSDP 120 VYGCVSTILA LQQQVASLQA ELAMLQTQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-38 | 48 | 148 | 11 | 110 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-38 | 48 | 148 | 11 | 110 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang02g11990.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014524233.1 | 5e-98 | LOB domain-containing protein 20 | ||||
Swissprot | Q9SRV3 | 4e-61 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | A0A0L9VM83 | 1e-105 | A0A0L9VM83_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3T9I8 | 1e-105 | A0A0S3T9I8_PHAAN; Uncharacterized protein | ||||
STRING | XP_007151760.1 | 3e-89 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7715 | 31 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 3e-51 | LOB domain-containing protein 20 |
Publications ? help Back to Top | |||
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