PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g11810.1
Common NameLR48_Vigan10g175800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 352aa    MW: 40095.3 Da    PI: 8.3109
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g11810.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.36.2e-5391391128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+ +yL+k+v++ +l++ ++i+evdiyk++Pw+Lp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++++
  Vang02g11810.1   9 LPPGFRFHPTDEELILHYLRKRVASIPLPV-SIIAEVDIYKCDPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKNIVAS 102
                     79****************************.89***************988899****************************************9 PP

             NAM  96 ....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +e+ g+kk Lvfykg+ pkg+kt+W+mheyrl
  Vang02g11810.1 103 lgggVREHFGVKKALVFYKGKPPKGVKTNWIMHEYRL 139
                     98776677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-646166IPR003441NAC domain
PROSITE profilePS5100561.4039166IPR003441NAC domain
PfamPF023652.9E-2710139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGTPQSNNLP PGFRFHPTDE ELILHYLRKR VASIPLPVSI IAEVDIYKCD PWELPAKAAF  60
GEKEWYFFSP RDRKYPNGAR PNRAAASGYW KATGTDKNIV ASLGGGVREH FGVKKALVFY  120
KGKPPKGVKT NWIMHEYRLV DTNKPVRIKD TSMRLDDWVL CRIYKKSKHS LSSITEAAQT  180
VEMKEQEEAE DREEQMKEGF SFSAISNTAT PLLPPPQATL ISQKSLSFSN LLDATDFSML  240
STILSENHNS SNYPNTTEPL FNSENLDHEI PQNFYNNNTD INNSTCFIQK NPSVIAHMDE  300
NMMYPPKKHH SSSCNFPNTT LQNQNPQRNF IFKQPHMNHQ LLPGPQYLQF Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-71816616165NO APICAL MERISTEM PROTEIN
1ut4_B1e-71816616165NO APICAL MERISTEM PROTEIN
1ut7_A1e-71816616165NO APICAL MERISTEM PROTEIN
1ut7_B1e-71816616165NO APICAL MERISTEM PROTEIN
4dul_A1e-71816616165NAC domain-containing protein 19
4dul_B1e-71816616165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g11810.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017437615.10.0PREDICTED: NAC domain-containing protein 18-like
SwissprotQ84TD61e-102NAC47_ARATH; NAC transcription factor 47
TrEMBLA0A0L9VLC40.0A0A0L9VLC4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T9A10.0A0A0S3T9A1_PHAAN; Uncharacterized protein
STRINGXP_007151816.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66212750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.15e-99NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]