PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang02g11730.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NAC

Protein Properties

Length: 271aa MW: 30882.7 Da PI: 8.7518

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang02g11730.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	109.3	4.6e-34	3	77	55	129
NAM 55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ek+wyfF+++d+ky+tg r+nrat+sgyWkatgkdke+++ k++lvg+kktLvfy+grapkgekt+Wvmhe+rle Vang02g11730.1 3 EKDWYFFCQKDRKYPTGLRTNRATQSGYWKATGKDKEIFKGKNNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLE 77 789***********************************99****************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	40.86	1	101	IPR003441	NAC domain
SuperFamily	SSF101941	1.31E-37	2	101	IPR003441	NAC domain
Pfam	PF02365	1.2E-16	5	76	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MGEKDWYFFC QKDRKYPTGL RTNRATQSGY WKATGKDKEI FKGKNNLVGM KKTLVFYRGR 60 APKGEKTNWV MHEFRLEGKF ACYNLPKAAK DEWVVCKVFH KSNTDVNKRV LPINPGIGLL 120 RMNSVGEDLF DFSSLPPLVD PLFDQPSHKK HIDNDFKGTR NLNSINNPMG IGTSNHNPLQ 180 NTTSPFNMFQ DYYMHQGNNS FQQCKREQFS NTVVSASQDT CLSNDRNTDT SSVVSKQDNM 240 GRNKALYEDL DQAPSSVATL SDLDCLWDDY *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-29	1	104	68	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-29	1	104	68	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-29	1	104	68	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-29	1	104	68	168	NO APICAL MERISTEM PROTEIN
3swm_A	1e-29	1	104	71	171	NAC domain-containing protein 19
3swm_B	1e-29	1	104	71	171	NAC domain-containing protein 19
3swm_C	1e-29	1	104	71	171	NAC domain-containing protein 19
3swm_D	1e-29	1	104	71	171	NAC domain-containing protein 19
3swp_A	1e-29	1	104	71	171	NAC domain-containing protein 19
3swp_B	1e-29	1	104	71	171	NAC domain-containing protein 19
3swp_C	1e-29	1	104	71	171	NAC domain-containing protein 19
3swp_D	1e-29	1	104	71	171	NAC domain-containing protein 19
4dul_A	1e-29	1	104	68	168	NAC domain-containing protein 19
4dul_B	1e-29	1	104	68	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang02g11730.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014505112.1	1e-174	NAC domain-containing protein 92
Swissprot	Q9FK44	4e-78	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A1S3UGE8	1e-172	A0A1S3UGE8_VIGRR; NAC domain-containing protein 92
STRING	XP_007151811.1	1e-161	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	1e-80	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]