PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang02g11670.1

Common Name

LR48_Vigan10g176600

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

G2-like

Protein Properties

Length: 347aa MW: 38840.8 Da PI: 6.3938

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang02g11670.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.1	2.6e-30	47	100	1	54
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 kprl+Wtp+LHerF+eav+qLGG++kAtPkt+l+lm+++gLtl+h+kSHLQ R Vang02g11670.1 47 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQVQR 100 79*************************************************877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.837	44	104	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-27	45	100	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.4E-14	46	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.1E-21	47	101	IPR006447	Myb domain, plants
Pfam	PF00249	8.1E-9	49	98	IPR001005	SANT/Myb domain
Pfam	PF14379	7.2E-12	91	123	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MYHQQQQQIA ARNLHALRMH SHTERHMMMQ GGNGACDSGL VLSTDAKPRL KWTPDLHERF 60 IEAVNQLGGA DKATPKTVLK LMGIPGLTLY HLKSHLQVQR HLQLRIEAQG KYLQAVLEKA 120 QETLGRQNLG AEGVEAAKVQ LSELASRVSS QSLDTKFSEL KELQVLWPQQ TQEGQATECS 180 MGSFLTYSED SQRDRETHNM SLNLIAFNGP PFSVSKDCVE ESMHLKPDLT LSEDVKQNMM 240 FLSSSSDGKV VKGDFLQEGP SSLLSMNVGV LEEEKFGRTT LSKEEGWKVR NSTESGRMAV 300 KLNHEKISPD YRLPNFEVKL DLNSHDDNDA SSHCQQFDLN GFSWNC*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MYHQQQQQIA ARNLHALRMH SHTERHMMMQ GGNGACDSGL VLSTDAKPRL KWTPDLHERF  60
IEAVNQLGGA DKATPKTVLK LMGIPGLTLY HLKSHLQVQR HLQLRIEAQG KYLQAVLEKA  120
QETLGRQNLG AEGVEAAKVQ LSELASRVSS QSLDTKFSEL KELQVLWPQQ TQEGQATECS  180
MGSFLTYSED SQRDRETHNM SLNLIAFNGP PFSVSKDCVE ESMHLKPDLT LSEDVKQNMM  240
FLSSSSDGKV VKGDFLQEGP SSLLSMNVGV LEEEKFGRTT LSKEEGWKVR NSTESGRMAV  300
KLNHEKISPD YRLPNFEVKL DLNSHDDNDA SSHCQQFDLN GFSWNC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-19	46	105	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-19	46	105	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-19	46	105	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-19	46	105	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-19	46	105	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-19	46	105	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-19	46	105	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-19	46	105	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang02g11670.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017439033.1	0.0	PREDICTED: myb-related protein 2-like isoform X2
TrEMBL	A0A0L9VMA2	0.0	A0A0L9VMA2_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3T9V2	0.0	A0A0S3T9V2_PHAAN; Uncharacterized protein
STRING	XP_007151824.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3852	31	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.1	5e-82	G2-like family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]