PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang02g09600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 214aa MW: 22862.2 Da PI: 7.0929 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.4 | 2.1e-19 | 88 | 135 | 5 | 56 |
AP2 5 GVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 GVr+++ +g+W+AeIrdp + +r++lg+f+t+e Aa+a+++a+++++g+ Vang02g09600.1 88 GVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTEEAAARAYDEAALRFRGN 135 9*****.**********7.....337*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.683 | 85 | 142 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-9 | 86 | 97 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-13 | 88 | 134 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.16E-19 | 88 | 144 | No hit | No description |
SuperFamily | SSF54171 | 1.37E-21 | 88 | 144 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.9E-31 | 88 | 143 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-33 | 88 | 148 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-9 | 108 | 124 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MSLLTVAYQR GSGEFIRFTA DDGGEGEHGY GHDGGSGGSA GFNFNQGMLQ QQGEVTMQGG 60 SLVSGYNRGD PELRQMVSAL THVVSSGGVR QRPWGKWAAE IRDPHKAARV WLGTFDTEEA 120 AARAYDEAAL RFRGNRAKLN FPENVRAVPP IQPFQPATRL TSTNELFPTT GKPPSSRQQA 180 GDAAVNMSPW FGSGDRAQTS TPPHDQVSQV GGQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-21 | 88 | 145 | 8 | 66 | ATERF1 |
3gcc_A | 7e-21 | 88 | 145 | 8 | 66 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang02g09600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 1e-143 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017437886.1 | 7e-36 | PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X1 | ||||
Refseq | XP_017437887.1 | 7e-36 | PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X2 | ||||
TrEMBL | A0A0L9VKU4 | 8e-35 | A0A0L9VKU4_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3TAF0 | 2e-34 | A0A0S3TAF0_PHAAN; Uncharacterized protein | ||||
STRING | XP_007151985.1 | 1e-34 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40724 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 2e-26 | ethylene response factor 110 |