PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang02g09500.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 611aa MW: 67774.9 Da PI: 6.4161

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang02g09500.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.8	1e-06	365	386	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H Vang02g09500.1 365 FCTICGKGFKRDANLRMHMRGH 386 6*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.81E-5	362	389	No hit	No description
PROSITE profile	PS50157	12.03	364	391	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0026	364	386	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.5E-5	365	414	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	366	386	IPR007087	Zinc finger, C2H2
SMART	SM00355	47	412	445	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	21	450	472	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 611 aa Download sequence Send to blast
MATSKGVVVD RPGRWSTTRS GGRSAWWVVA LVVGLSTWWL ATRYAGQPLD LVVGLVVSQP 60 GSSRRLSRST ILLTSFVYCS IDLRLSIEVI KNLDKELEMD TNGSLRANNW ARSSSLTSDS 120 MSFPNFGLQN NQPKWDDPSN SDYGIRAEVP FKDFNQPSQT QSPLPCNSNN EIEIPNQENC 180 HLNESSQNSA LQDWDPNVML NNLSFLEEKI HQLQDLVHLI VRQKGIGQPN ELVTQEQQLI 240 TTDLTSIIIQ LISTAGSLLP SVRHNLANTA SLFGQIDQLR ETTIPSGTGG SSSCIQPENN 300 GGKKMSDQSM QTDLPNNCEM EPNYNVVEQE LKDEEDVDDG ENLAPGSYEI LQLEKEEILA 360 PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTPAALAKPH KESGSPKLIK RYSCPYPGCK 420 RNKDHKKFQP LKTILCVKNH YKRTHCDKSY TCSRCNTKKF SVMADLKTHE KHCGKDKWLC 480 SCGTTFSRKD KLFGHIALFQ GHTPAIPLDD AKGVAEPPNH DSKENSKVGN VQFSFGSSPS 540 SNGNEVEHVM DVKGNCDDPL SFFSSLNFDN SFGGFNEFTR PLFDDSEGSF SFVIPGSFKS 600 DGVSSPDNLL *

Sequence ? help Back to Top

Protein Sequence Length: 611 aa Download sequence Send to blast

MATSKGVVVD RPGRWSTTRS GGRSAWWVVA LVVGLSTWWL ATRYAGQPLD LVVGLVVSQP  60
GSSRRLSRST ILLTSFVYCS IDLRLSIEVI KNLDKELEMD TNGSLRANNW ARSSSLTSDS  120
MSFPNFGLQN NQPKWDDPSN SDYGIRAEVP FKDFNQPSQT QSPLPCNSNN EIEIPNQENC  180
HLNESSQNSA LQDWDPNVML NNLSFLEEKI HQLQDLVHLI VRQKGIGQPN ELVTQEQQLI  240
TTDLTSIIIQ LISTAGSLLP SVRHNLANTA SLFGQIDQLR ETTIPSGTGG SSSCIQPENN  300
GGKKMSDQSM QTDLPNNCEM EPNYNVVEQE LKDEEDVDDG ENLAPGSYEI LQLEKEEILA  360
PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTPAALAKPH KESGSPKLIK RYSCPYPGCK  420
RNKDHKKFQP LKTILCVKNH YKRTHCDKSY TCSRCNTKKF SVMADLKTHE KHCGKDKWLC  480
SCGTTFSRKD KLFGHIALFQ GHTPAIPLDD AKGVAEPPNH DSKENSKVGN VQFSFGSSPS  540
SNGNEVEHVM DVKGNCDDPL SFFSSLNFDN SFGGFNEFTR PLFDDSEGSF SFVIPGSFKS  600
DGVSSPDNLL *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269\|PubMed:17535918, ECO:0000269\|PubMed:18826429, ECO:0000269\|PubMed:19321711, ECO:0000269\|PubMed:23935008}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang02g09500.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269\|PubMed:17535918}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017440578.1	0.0	PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
Swissprot	Q9C8N5	1e-172	STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBL	A0A0L9VL16	0.0	A0A0L9VL16_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3TA62	0.0	A0A0S3TA62_PHAAN; Uncharacterized protein
STRING	XP_007151889.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5340	32	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-160	C2H2 family protein

Publications ? help Back to Top
Kobayashi Y, et al. Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions. Plant Physiol., 2013. 163(1): p. 180-92 [PMID:23839867] Yokosho K,Yamaji N,Ma JF Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench). Plant Cell Physiol., 2014. 55(12): p. 2077-91 [PMID:25273892] Geng X, et al. LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis. Plant J., 2017. 90(3): p. 491-504 [PMID:28181322] Balzergue C, et al. Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation. Nat Commun, 2017. 8: p. 15300 [PMID:28504266] Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation. Front Plant Sci, 2017. 8: p. 822 [PMID:28567051] Jiang F, et al. Identification and characterization of suppressor mutants of stop1. BMC Plant Biol., 2017. 17(1): p. 128 [PMID:28738784] Daspute AA, et al. Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms. Front Plant Sci, 2017. 8: p. 1358 [PMID:28848571] Sharma A,Wai CM,Ming R,Yu Q Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis. Genome Biol Evol, 2017. 9(9): p. 2170-2190 [PMID:28922793] Zhang Y, et al. The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis. Front Plant Sci, 2018. 9: p. 118 [PMID:29491872]