PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g09080.1
Common NameLR48_Vigan01g054900
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 317aa    MW: 35874.2 Da    PI: 6.5864
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g09080.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.85.4e-33632031128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...... 79 
                     lp G++F+P+d+e++ e+L++kv ++       ++  e   +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++      
  Vang02g09080.1  63 LPSGVKFDPNDQEIL-EHLEAKVLSDVpklhplID--EfipTLEGEnGICYTHPEKLP-GVSKDGQIRHFFHRPSKAYTTGTRKRRKVHtdeegs 153
                     699***********9.99****9999856643322..22222333336**********.555666777******************744446555 PP

             NAM  80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     + +W++tgk+++v++ +g ++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Vang02g09080.1 154 ETRWHKTGKTRPVFV-GGVVKGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 203
                     778************.**************6658***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.11E-3758222IPR003441NAC domain
PROSITE profilePS5100533.40663222IPR003441NAC domain
PfamPF023651.0E-1464203IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MTWCNDSDEE RGIELVAPTV TPATNNTLVT DTKQTENRTI TCPSCGHNIE FQDQTGINDL  60
PGLPSGVKFD PNDQEILEHL EAKVLSDVPK LHPLIDEFIP TLEGENGICY THPEKLPGVS  120
KDGQIRHFFH RPSKAYTTGT RKRRKVHTDE EGSETRWHKT GKTRPVFVGG VVKGFKKILV  180
LYTNYGRQKK PEKTNWVMHQ YHLGSNEEEK DGELVVSKVF YQTQPRQCGT SIIKQDLYDE  240
ERLTNQSVVD DDNIVPRSAT LMDYYNNPSF INYEHVGGRN NRETSPQLIP NLVMQGDSSS  300
FIRLAMDATK ARLNTK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g09080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017428054.10.0PREDICTED: NAC domain-containing protein 73-like
RefseqXP_017428062.10.0PREDICTED: NAC domain-containing protein 73-like
RefseqXP_017428071.10.0PREDICTED: NAC domain-containing protein 73-like
SwissprotO494591e-123NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A0L9TLI20.0A0A0L9TLI2_PHAAN; Uncharacterized protein
TrEMBLA0A0S3QZA70.0A0A0S3QZA7_PHAAN; Uncharacterized protein
STRINGGLYMA07G32250.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.11e-118NAC domain containing protein 10
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]
  4. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]