PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang02g09040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bZIP | ||||||||
Protein Properties | Length: 149aa MW: 17034.6 Da PI: 11.5841 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 38.7 | 2.2e-12 | 70 | 110 | 5 | 45 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 ++ +r+ +NRe+ArrsR RK++ ++ L + v++L +eN++ Vang02g09040.1 70 RKRKRMTSNRESARRSRMRKQKHLDDLVTQVAQLRKENQQI 110 57899*********************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.2E-9 | 66 | 125 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.979 | 68 | 110 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.6E-10 | 68 | 111 | No hit | No description |
SuperFamily | SSF57959 | 9.38E-11 | 70 | 113 | No hit | No description |
Pfam | PF00170 | 3.2E-10 | 70 | 111 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 1.72E-15 | 71 | 113 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 73 | 88 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MAAITRHRTF PLYNRTCIKT RPAKKNPTIT NRALLGARPM ASSSGTCSGS SSLLQNSGSE 60 XDXQXVMXQR KRKRMTSNRE SARRSRMRKQ KHLDDLVTQV AQLRKENQQI LTTERDHRLE 120 SLNEIIELWL CVRRRGEDEV GIPTVPFL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 69 | 90 | RKRKRMTSNRESARRSRMRKQK |
2 | 82 | 89 | RRSRMRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang02g09040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017406399.1 | 2e-53 | PREDICTED: bZIP transcription factor 11-like | ||||
Swissprot | C0Z2L5 | 7e-23 | BZP44_ARATH; bZIP transcription factor 44 | ||||
TrEMBL | A0A0L9VK41 | 1e-75 | A0A0L9VK41_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA12G04440.1 | 1e-31 | (Glycine max) | ||||
STRING | XP_007131800.1 | 1e-31 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF613 | 34 | 147 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34590.1 | 4e-20 | G-box binding factor 6 |
Publications ? help Back to Top | |||
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