PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g08740.1
Common NameLR48_Vigan10g130700
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 172aa    MW: 19335.1 Da    PI: 10.8527
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g08740.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.75.1e-1370128563
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     ++ +r+ +NRe+ArrsR RK++ ++ L + v++L +eN++   +++  +++  ++++e+
  Vang02g08740.1  70 RKKKRMTSNRESARRSRMRKQKHLDDLVTQVAQLRKENQQILTTVNITTQQFLSVEAEN 128
                     6889************************************9999988888877777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.1E-1866130IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.61168131IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.1E-1169145No hitNo description
PfamPF001701.3E-1070114IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.63E-1270122No hitNo description
CDDcd147021.68E-1871121No hitNo description
PROSITE patternPS0003607388IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MAAITRHRTF PLYNRTCIKT RPTKKNPTIT NRALLGAGPM ASSSGTCSSS SSLLQNSGSE  60
EDLQAVMDQR KKKRMTSNRE SARRSRMRKQ KHLDDLVTQV AQLRKENQQI LTTVNITTQQ  120
FLSVEAENSV LRAQVGELSH RLESLNEIIE LWLCVRRRGE DEVGIPTVPF L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16990RKKKRMTSNRESARRSRMRKQK
28289RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g08740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017438216.16e-90PREDICTED: bZIP transcription factor 11-like
SwissprotC0Z2L59e-42BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A0L9VK411e-121A0A0L9VK41_PHAAN; Uncharacterized protein
STRINGXP_007131800.13e-59(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61334147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.15e-39G-box binding factor 6
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  3. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]