PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang02g08730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 166aa MW: 18407 Da PI: 10.1766 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.7 | 7.9e-15 | 91 | 137 | 1 | 51 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 + y+G r ++ +gr++ eIrdp + ++r++lg+f++aeeA +a++aa++ Vang02g08730.1 91 PWYRGMRKRP-WGRFATEIRDPLK---KARVWLGTFDSAEEAGRAYDAAAR 137 57********.**********743...5*********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.7E-9 | 91 | 136 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-15 | 92 | 138 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.215 | 92 | 136 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.0E-18 | 92 | 147 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-22 | 93 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-10 | 93 | 104 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.36E-21 | 93 | 136 | No hit | No description |
PRINTS | PR00367 | 6.8E-10 | 115 | 131 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MDLPDPDGRG RHHGRLLLHR LRLSLLQLPL QGTGTSEDRP KSCFESQRSN SLFPEGNLMS 60 LKGNMRKGRG RATSVVTAAA VATNGSLLKE PWYRGMRKRP WGRFATEIRD PLKKARVWLG 120 TFDSAEEAGR AYDAAARTPL PFDLNAPLFD DVAADDDLRC TVLYL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-14 | 93 | 136 | 6 | 50 | ATERF1 |
3gcc_A | 1e-14 | 93 | 136 | 6 | 50 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang02g08730.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-170 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0L9TKS1 | 7e-66 | A0A0L9TKS1_PHAAN; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15712 | 7 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20310.1 | 6e-19 | ethylene response factor 7 |