PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g08580.2
Common NameLR48_Vigan01g060200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LSD
Protein Properties Length: 109aa    MW: 11776.2 Da    PI: 5.4894
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g08580.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD147.33.3e-155882125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    Cg+C +lL+YP+GA++VRC++C++V
  Vang02g08580.2 58 CGSCAVLLMYPFGASHVRCSSCQFV 82
                    ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.5E-135583IPR005735Zinc finger, LSD1-type
PfamPF069433.8E-125882IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MHSQQTEKEE DDEGPPPGWQ PITNHPPPPQ QQPPPQPQPQ PQPPPPSPCA DQVGQVECGS  60
CAVLLMYPFG ASHVRCSSCQ FVTEIGAHNE RPPWSIQQRK PVPAKSGC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g08580.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-76AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017412978.14e-49PREDICTED: protein LOL2
TrEMBLA0A0L9TKT99e-48A0A0L9TKT9_PHAAN; Uncharacterized protein
TrEMBLA0A0S3QZJ29e-48A0A0S3QZJ2_PHAAN; Uncharacterized protein
STRINGGLYMA07G31600.13e-36(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130263132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.16e-19lsd one like 2
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]