PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang02g08580.2 | ||||||||
Common Name | LR48_Vigan01g060200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | LSD | ||||||||
Protein Properties | Length: 109aa MW: 11776.2 Da PI: 5.4894 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 47.3 | 3.3e-15 | 58 | 82 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C +lL+YP+GA++VRC++C++V Vang02g08580.2 58 CGSCAVLLMYPFGASHVRCSSCQFV 82 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.5E-13 | 55 | 83 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.8E-12 | 58 | 82 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MHSQQTEKEE DDEGPPPGWQ PITNHPPPPQ QQPPPQPQPQ PQPPPPSPCA DQVGQVECGS 60 CAVLLMYPFG ASHVRCSSCQ FVTEIGAHNE RPPWSIQQRK PVPAKSGC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang02g08580.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-76 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017412978.1 | 4e-49 | PREDICTED: protein LOL2 | ||||
TrEMBL | A0A0L9TKT9 | 9e-48 | A0A0L9TKT9_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3QZJ2 | 9e-48 | A0A0S3QZJ2_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA07G31600.1 | 3e-36 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13026 | 31 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 6e-19 | lsd one like 2 |
Publications ? help Back to Top | |||
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