PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g07630.1
Common NameLR48_Vigan01g070300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 418aa    MW: 46047.2 Da    PI: 6.6925
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g07630.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.90.00013593911754
                     HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++   L++l+ +      +K + a++L +A+eYIk L
  Vang02g07630.1 359 GDRVTALQQLVSPF-----GKTDTASVLHEAIEYIKFL 391
                     55666677777776.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.668342391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.43E-5352395No hitNo description
SuperFamilySSF474597.46E-10352399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-7356395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MAEEFQARIC GENWWSSSID SSPIASSPCS VAAHNDAGIY STRQTDLKAT KCCVEETNNL  60
LSNTYLGFAD AQKSPKSESA RGSDSLLIDS TLQMMGFGLT SSASDNWNQH LLVRCNGRAE  120
SNFDSVLQEE TGIDSSNSQI RRNWNPKSFS CAGGGHQQID NFKPLNQEFS VDYQNLCSLT  180
SNGLSSNRDF AIGSASYGNP SPLRSLYEPD PHPQLPQHSL FTNHSMSYSS KASYGTPCTE  240
LTPTWSKVTT FLKPTTIAKQ HPIGLHFSNN TTFWSASADA LNDIRAGTFA SSQSQYQTPT  300
FDQEKPNCPS TLLNKLNSEE TLDSATMAKK DACEASLKRP RIETPSPLPT FKVRKEKLGD  360
RVTALQQLVS PFGKTDTASV LHEAIEYIKF LHDQVNPPSP RQRLHPRHLF ILILEVH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g07630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017426031.10.0PREDICTED: transcription factor bHLH112
TrEMBLA0A0L9TKN00.0A0A0L9TKN0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3QZU80.0A0A0S3QZU8_PHAAN; Uncharacterized protein
STRINGXP_007159223.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.12e-30bHLH family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]