PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang02g06670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | TCP | ||||||||
Protein Properties | Length: 463aa MW: 50787.8 Da PI: 6.6942 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 114.7 | 1.2e-35 | 121 | 214 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssasec..eaesssssasnss 86 +g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++ s + ++++ +n+s Vang02g06670.1 121 TGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDELAELppwnptatS------MqpPQQEEIALRENKS 209 79**************************************************************775433221......2222222222222222 PP TCP 87 sg..k 89 + + Vang02g06670.1 210 LAveQ 214 22321 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.2E-33 | 121 | 228 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.033 | 123 | 181 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
LVFNTGHVTT EEEEGGNQQD QQPHPLRFLH RQQRQDEEPS YTGLDTELLN PLQLPKRRSS 60 LPPLPPPPSS LTSTEHARKM GESQNHHLHH QAPTPSRSAM RAGGGGGEIV EVQGGHIVRS 120 TGRKDRHSKV CTAKGPRDRR VRLAAHTAIQ FYDVQDRLGY DRPSKAVDWL IKKAKTAIDE 180 LAELPPWNPT ATSMQPPQQE EIALRENKSL AVEQDPTAFG NRGESNVVVA ATRVPDQFSH 240 QQLESENANI GTSKYNSGPG FLPPSLDTDN IAETIKTFFP VEATTTSFQS YPPAPPDLRQ 300 QDLRLSLQSF QDPIMLQHQP QSHNEPVLFA GTALGFDGGS AWSEHQNHHS EEHRLLFGGN 360 SGHGGGFVFN TPAPAFGQFF SQRGPLQSSN TPSVRAWIDP SVDHHHHNHH YFSPLIHQGS 420 VAGGFSNGGG FSGFRIPARI QGEEEHDGVS DKPSSASSDS RH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-20 | 128 | 181 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 3e-20 | 128 | 181 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00203 | DAP | Transfer from AT1G53230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang02g06670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017433646.1 | 0.0 | PREDICTED: transcription factor TCP4-like | ||||
Swissprot | Q9MAH8 | 1e-100 | TCP3_ARATH; Transcription factor TCP3 | ||||
TrEMBL | A0A0L9V3S2 | 0.0 | A0A0L9V3S2_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3S9N5 | 0.0 | A0A0S3S9N5_PHAAN; Uncharacterized protein | ||||
STRING | XP_007133163.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53230.1 | 2e-64 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 |
Publications ? help Back to Top | |||
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