PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang02g06660.1 | ||||||||
Common Name | LR48_Vigan08g019400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 190aa MW: 21689.3 Da PI: 7.1804 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.3 | 7.3e-20 | 21 | 74 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ ++t+eq+++Le++F++n+++ e++ +LA++lg++ rqV +W+qN+Ra++k Vang02g06660.1 21 NKKRLTEEQVTILEKCFASNMKLEPEQKFHLANQLGVPPRQVAIWYQNKRARWK 74 56789************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 112.5 | 2.8e-36 | 21 | 112 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+rl++eqv++LE++F ++ kLepe+K +la++Lg+ prqva+W+qn+RAR+kt+ lE+d+ +L+++++++++e+++Lek+ve+L+++lk+ Vang02g06660.1 21 NKKRLTEEQVTILEKCFASNMKLEPEQKFHLANQLGVPPRQVAIWYQNKRARWKTQSLEVDHGVLQAKLENVMAEKKQLEKDVERLKADLKK 112 79***************9999*******************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.71E-18 | 13 | 77 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-18 | 14 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.261 | 16 | 76 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.5E-17 | 18 | 80 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.44E-15 | 19 | 77 | No hit | No description |
Pfam | PF00046 | 3.0E-17 | 21 | 74 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 51 | 74 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009646 | Biological Process | response to absence of light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MGDLFFSFKT QEHGHQRAKH NKKRLTEEQV TILEKCFASN MKLEPEQKFH LANQLGVPPR 60 QVAIWYQNKR ARWKTQSLEV DHGVLQAKLE NVMAEKKQLE KDVERLKADL KKAQEMLLIG 120 NNNKNNNNNN NNNNGSCCEF STSFEEGGSS GVVLDDHECW QSGEVMQVEE LYAYFMGANY 180 GSGLHEKRA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang02g06660.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014493595.1 | 1e-119 | homeobox-leucine zipper protein ATHB-52 | ||||
Refseq | XP_027908723.1 | 1e-118 | homeobox-leucine zipper protein ATHB-52 | ||||
TrEMBL | A0A0L9V365 | 1e-121 | A0A0L9V365_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3S9P6 | 1e-121 | A0A0S3S9P6_PHAAN; Uncharacterized protein | ||||
STRING | XP_007133162.1 | 1e-113 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 2e-36 | homeobox protein 52 |
Publications ? help Back to Top | |||
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