PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang02g05280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 746aa MW: 83665.3 Da PI: 5.2084 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.1 | 1.6e-05 | 201 | 224 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC +C++ F +++n++rHir+ H Vang02g05280.1 201 HKCDKCSREFCSPMNYRRHIRVdH 224 79*******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.556 | 201 | 229 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 203 | 224 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 746 aa Download sequence Send to blast |
MVVGGLDGER RPWLCGKVTF DGERPASFTS KRVSLLQREE GEGELSVVTL NFLSNNFLAD 60 LLPAKTHCIP SAPLHRSSRL SSVSELSLPP HFRQFPLAKL KASSSADVMN TEEKDTIGGE 120 SSLHFPTPDG NSDHLLHLLY ALDSQGVNNS FSSLSVHIFG GSFSRAFRNL SKRKLYWISL 180 LTHLTSFPGW PLLSPLNVQL HKCDKCSREF CSPMNYRRHI RVDHRKKNLD KEFTKNRDLL 240 EAYWDKLSAE EAKEVISLEN VVLEEVPGSS ILKSLKTLVL NQRFYSFPAH YLMAGTVLLD 300 ILQAKSSSFP ISSQVLFNIL DEASEKTFLC GTAESVQRYV FVGDAGNNGL ELRNIIAFTS 360 FLLEQKLVKA WLTAKEAEAL RCQKQLVEEE EAAQKRQAEI LERKRQKKLR QKEQKAREQR 420 HKAEAEINGY IESAVKALSL SEASLETHNF EAHNPNAFSD NVASPVPPQY IDTNKEINED 480 TRSEYDTIAD QNLERWSEAE DLHTDQISPL PNFEVNQKHE AHNPNAFSDN VASPNLERWS 540 EADDLHTDQI SPLPNLEVNQ KHEANNDNKA SAIGRGSEVW SPKSEEEIDK VVLKTTQEKK 600 PDQLKNQLLI GSISINIDNC KQSEGNMVTS QKDSMVENVG KENSSWDKPM NTDPVSQHET 660 EDQVPVQSDE TEVSMGSTER TADIRRFQSF IQEAKAFLAR RWEEALASDH VVLHISSDSE 720 SSSSEETQDS IADTKLPATS GANPD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 401 | 408 | ERKRQKKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang02g05280.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017438841.1 | 0.0 | PREDICTED: uncharacterized protein LOC108344844 isoform X1 | ||||
TrEMBL | A0A0L9VJ84 | 0.0 | A0A0L9VJ84_PHAAN; Uncharacterized protein | ||||
STRING | XP_007152241.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4517 | 27 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25610.1 | 3e-84 | C2H2-like zinc finger protein |