PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang02g04910.1 | ||||||||
Common Name | LR48_Vigan10g021100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 410aa MW: 46046.3 Da PI: 4.696 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.5 | 1.1e-07 | 12 | 57 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +r C+ + + ++++fC ++ +lC+ C H+ H++v+l Vang02g04910.1 12 ARACESCLKVRARWFCAADDAFLCHGCDNMVHSAnqlarrHERVKL 57 578******99*********************66888889999875 PP | |||||||
2 | CCT | 67 | 5.2e-23 | 360 | 403 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++ Vang02g04910.1 360 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRT 403 9*****************************************87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.281 | 10 | 57 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 6.6E-7 | 10 | 57 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.8E-5 | 12 | 57 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.14E-6 | 13 | 57 | No hit | No description |
Pfam | PF06203 | 9.3E-18 | 360 | 402 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.993 | 360 | 402 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 410 aa Download sequence Send to blast |
MKEASALGAR TARACESCLK VRARWFCAAD DAFLCHGCDN MVHSANQLAR RHERVKLQTA 60 SSKVNYSVTL NQNNNVAWHS GFTRKARTPR HNSKHVTVQL QEQQKKIVHE EVFFNNTISL 120 PLVPELGSEE ALHNYESEEQ LLCRVPVFDA ELCSVYNEVK EEVLAGEEVF DLDNFSSELL 180 PSDMDLAEFA ADVESLLGNG ADEDSSEHVK GSELLLDCKE EDEEMDACVD AVGAKETMVK 240 VKDEEELDSD TPCHLDSIIL DMNSEAFNWN DIVESESLAQ EQEEEASTVG ADKKDMFLRL 300 NYEDVISAWA SQGCSPWTTG TPPNFNSDDC WPDFLGSNGG DVQCCYGEMK SLRGHADGGR 360 EARVSRYREK RRTRLFAKKI RYEVRKLNAE KRPRMKGRFV KRTSIALPA* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 370 | 386 | RRTRLFAKKIRYEVRKL |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang02g04910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017437659.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 16 | ||||
TrEMBL | A0A0L9VHX8 | 0.0 | A0A0L9VHX8_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3TCC0 | 0.0 | A0A0S3TCC0_PHAAN; Uncharacterized protein | ||||
STRING | XP_007152761.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1473 | 33 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25440.1 | 5e-94 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
---|---|---|---|
|