PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang02g03980.1 | ||||||||
Common Name | LR48_Vigan10g084800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 685aa MW: 75324.6 Da PI: 5.7634 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.2 | 3.1e-09 | 55 | 86 | 26 | 56 |
-HHHHHHH.HHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 26 saeereeL.AkklgLterqVkvWFqNrRakek 56 + +++++L Ak+lgL+ +qVk+WFqNrR+++k Vang02g03980.1 55 TPQQIQDLeAKRLGLENKQVKFWFQNRRTQMK 86 567888887999*****************999 PP | |||||||
2 | START | 31.7 | 3.5e-11 | 243 | 336 | 2 | 83 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 +a a++elvk+a + p+W kss e +n de+ + f++ v + +ea ra+gvv + + lve+++d+ +W+e++ +a tl Vang02g03980.1 243 IAINAMDELVKMARQDNPLWIKSSdgrnEVLNCDEYARMFPTF-VgtkpagYVIEATRATGVVLASSLGLVETFMDVD-RWQEMFSsmvaSACTL 335 57789*******************999999999****999774.25999*****************************.******9555555555 PP E CS START 83 e 83 + Vang02g03980.1 336 D 336 5 PP | |||||||
3 | START | 85.6 | 1.1e-27 | 339 | 430 | 115 | 206 |
EEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 115 irqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++ + +g+wv+vdvS+d ++ ++s++++ +++lpSg++i++++ng sk+twveh ++++++h+l r+lv+sg+ +ga++w a l rqce+ Vang02g03980.1 339 CKHHAEGVWVVVDVSIDIMRNASNSHPSMSCRRLPSGCVIQDMPNGLSKITWVEHSQYDESVIHQLCRPLVSSGIGFGAQRWIASLLRQCEC 430 8999**************************************************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.63E-10 | 30 | 88 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 0.008 | 47 | 92 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.28E-8 | 48 | 88 | No hit | No description |
Pfam | PF00046 | 1.3E-6 | 55 | 86 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 10.754 | 64 | 88 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-7 | 64 | 95 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50848 | 26.343 | 233 | 433 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.22E-19 | 236 | 430 | No hit | No description |
CDD | cd08875 | 8.77E-85 | 237 | 429 | No hit | No description |
SMART | SM00234 | 6.1E-8 | 242 | 430 | IPR002913 | START domain |
Pfam | PF01852 | 2.3E-5 | 243 | 328 | IPR002913 | START domain |
Pfam | PF01852 | 2.5E-22 | 339 | 430 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.81E-13 | 452 | 648 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 685 aa Download sequence Send to blast |
MMGESFDTSN LLGRIRDDDY ESRSESDNFD GGSGDEQDVG DDQPQRKKKK YHRHTPQQIQ 60 DLEAKRLGLE NKQVKFWFQN RRTQMKTQLE RHENMVLKQE NDKLRAENGV MKEALANPIC 120 NNCGGPAIPG QISLEEHQTR IENARLKDEL NRICTLANKF LGRSLSSLAS PMSLTPPNSG 180 LDLAIGRNGI GGSSNFGMPV PIGFDLGDGA LGSSPAMASM GARAPLGMMG NEIHLDRSML 240 IDIAINAMDE LVKMARQDNP LWIKSSDGRN EVLNCDEYAR MFPTFVGTKP AGYVIEATRA 300 TGVVLASSLG LVETFMDVDR WQEMFSSMVA SACTLDVFCK HHAEGVWVVV DVSIDIMRNA 360 SNSHPSMSCR RLPSGCVIQD MPNGLSKITW VEHSQYDESV IHQLCRPLVS SGIGFGAQRW 420 IASLLRQCEC LAILMTPPGP SDDPTVLSQS NRRSVLKLAQ RMNEYFCSGI CASSARKWDV 480 LHIGSLADDM KIMARKIVDD PNEVPGYVLS ASTCVWLPVP RQRVFDFLRN EQLRGEWDML 540 SKGGPMKEML HVPKGQDHGN CVSILHYANN EGNVLYLQES WTDASGSMVV YSPINMQSLN 600 MMMMNSGDSS FVSLRPSGFA ILPDGHSNNS DNNDGGGGSC LLTVGLQMLQ NDNPSAKFTL 660 ESVQTINSLL SCTIQKVKEA LGVS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang02g03980.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017438850.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like | ||||
Refseq | XP_017438851.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | A0A0L9VIU4 | 0.0 | A0A0L9VIU4_PHAAN; Uncharacterized protein | ||||
STRING | XP_007152327.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1192 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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