PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang02g02870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 251aa MW: 28780.4 Da PI: 4.5543 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.7 | 8.2e-52 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv++yLk+k++g+++el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky +g r+nrat+ gy k+tgkd++v Vang02g02870.1 6 LPPGFRFHPTDEELVNYYLKRKIDGQEIEL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYXNGFRTNRATRXGYXKSTGKDRKVS 99 79****************************.99**************84335556888************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++ +g+kktLv+y+grap+g +tdWvmheyrl Vang02g02870.1 100 C-QSRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRL 133 *.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-57 | 4 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.39 | 6 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-27 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MSPVGLPPGF RFHPTDEELV NYYLKRKIDG QEIELDIIPE VDLYKCEPWE LAEKSFLPSR 60 DPEWYFFGPR DRKYXNGFRT NRATRXGYXK STGKDRKVSC QSRPIGMKKT LVYYRGRAPQ 120 GIRTDWVMHE YRLDDKECED TTGLQVGHGD YGKEFSNEDT YALCRVFKKN GICSEIEEQG 180 QCSISLIESC QTMINECDTM SPDIPGASSS CLEEEDKDDS WMQFITEDAW YSSNAAMVGG 240 EELSHVTFTN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-51 | 4 | 133 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00363 | DAP | Transfer from AT3G17730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang02g02870.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 1e-154 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017439329.1 | 1e-172 | PREDICTED: NAC domain-containing protein 86 | ||||
Swissprot | Q9FFI5 | 2e-82 | NAC86_ARATH; NAC domain-containing protein 86 | ||||
TrEMBL | A0A0S3TCB4 | 1e-171 | A0A0S3TCB4_PHAAN; Uncharacterized protein | ||||
STRING | XP_007152594.1 | 1e-169 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9564 | 33 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G17730.1 | 1e-125 | NAC domain containing protein 57 |
Publications ? help Back to Top | |||
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