PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang02g02180.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | CPP | ||||||||
Protein Properties | Length: 681aa MW: 73904.9 Da PI: 8.0287 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 45.6 | 1.4e-14 | 177 | 216 | 2 | 42 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+CnCk+skClk+YCeCfa+g +C+ C+C +C+N+ e+ Vang02g02180.2 177 KQKQCNCKHSKCLKLYCECFASGIYCDG-CNCVNCFNNVEN 216 89**************************.********9875 PP | |||||||
2 | TCR | 50.7 | 3.7e-16 | 261 | 300 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e Vang02g02180.2 261 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 300 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.2E-17 | 176 | 216 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 37.003 | 177 | 301 | IPR005172 | CRC domain |
Pfam | PF03638 | 3.5E-11 | 178 | 213 | IPR005172 | CRC domain |
SMART | SM01114 | 8.4E-20 | 261 | 302 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.4E-12 | 264 | 299 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 681 aa Download sequence Send to blast |
LQLPYLSSAP FPRALRLDPR ASQFRYTRSN QSRATQSAHV FEFELRFEAI EALFRFIAVI 60 LGLFRRNSGI AVRVFGFFFC VASRAMGEEE GGDIAPKNAL SSEVVPPAVT STAALEVPAK 120 KLARQLDFTG APDHPQQQPV AALPLPPQAP HSRIGKPESP KSRSRSNFEM KDATPKKQKQ 180 CNCKHSKCLK LYCECFASGI YCDGCNCVNC FNNVENEAAR REAVEATLER NPNAFRPKIA 240 SSPHGTRDSR EEAGEVLILG KHNKGCHCKK SGCLKKYCEC FQANILCSEN CKCMDCKNFE 300 GSEERQALFH GDQNNMAYIQ QAANAAITGA IGSSGYSSPP VSKKRKGQEL FFWPTAKDPS 360 ISKLGQQVNH VRGPAPSSSL SPVSGARVGT ATLGPSKFMY RSLLADIIQP QHLKELCSVL 420 VLVSGQAAMT LSDQKILMEK HAEDQTETSL ASSSQEQLPP SQKEGHVEKT VADDCSSANQ 480 TDKISPDDSS SDGADVPKGR PMSPGTLALM CDEQDTMFMT AASPIGPMAH ACNTSSQFPY 540 GQGMTEVYAE QERIVLTKFR DFLNRVITMG EINGKLILSP FQISDATSLT LHIGGLTLVL 600 NTLLYETKCS SLARNELENQ KDPIINGIGN ANSVIVRQHG TSSNGVTKPS VSPLATTSTR 660 MIPGNISENG ESKVKIEKDI * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 6e-32 | 169 | 310 | 2 | 132 | Protein lin-54 homolog |
5fd3_B | 6e-32 | 169 | 310 | 2 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00045 | PBM | Transfer from AT4G29000 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang02g02180.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017440570.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X1 | ||||
Swissprot | Q9SZD1 | 0.0 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A4D6LUG1 | 0.0 | A0A4D6LUG1_VIGUN; Uncharacterized protein | ||||
STRING | XP_007152845.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-167 | Tesmin/TSO1-like CXC domain-containing protein |