PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g02060.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 327aa    MW: 35594.9 Da    PI: 8.196
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g02060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH120.000392072451255
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Vang02g02060.1 207 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 245
                     6678889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.56195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-10205255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.85E-6205249No hitNo description
Gene3DG3DSA:4.10.280.102.7E-7209251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
LKISQKQEGM HRAVLQSSPV QQMMAGNPNW WNININTMPP QAPPFFSTPS NFSIPYAPSS  60
LPFPSWNENQ DLPDSWSQLL MSGVVDEQGK VGMGQFQTKK LENWEDQMLG QPPNASLVDV  120
KQENSVNSYV YGHGNEELQS SKPSWSPKSC ATSFSSNMLD FSNSNSTDAR LPPPDRSSEC  180
NSTAAGGALK KARVQPSATT QATFKVRKEK LGDRITALHQ LVSPFGKTDT ASVLLEAIGY  240
IRFLQSQIEA LSLPYLSGGP GSVRQQNSLL NNENCLKRKA AREPDTEEKK GLRSRGLCLV  300
PVSCTLQVGS DNGADYWAPA LGGGFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g02060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0938720.0BT093872.1 Soybean clone JCVI-FLGm-24O24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017437561.10.0PREDICTED: transcription factor bHLH68-like
SwissprotQ8S3D13e-82BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A0S3TCJ80.0A0A0S3TCJ8_PHAAN; Uncharacterized protein
STRINGXP_007152861.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.11e-84bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]