PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g01150.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family BBR-BPC
Protein Properties Length: 356aa    MW: 39710.4 Da    PI: 9.8929
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g01150.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind33.61.2e-10113172159
       GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdaki.rernlalsekkaavaerdma 59 
                     md d+  + rn+gyyepa+s+k++lglqlmss++e+     r++ + ls +++a+++r ++
  Vang02g01150.1 113 MDGDNGLNiRNWGYYEPATSFKSHLGLQLMSSMPEKPLIGgRNAAV-LSXTNGAFHHRXIE 172
                     888888888*************************988766355555.999*******9865 PP
2GAGA_bind284.93.6e-87185356123300
       GAGA_bind 123 avelreeeklealpie.eaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCt 216
                     ++ l++e    + ++e ea+ e+ +  ++kkrq++k+pk++kakk k+ ++++k+++++    +r++ +kk++++v+ng+++D+s++P+PvCsCt
  Vang02g01150.1 185 PE-LPKE----EREVEeEAVVEKATGGSRKKRQSPKVPKSPKAKKSKRGPRVPKNENAPTV--HRARVPKKTTEIVINGIDMDISSIPIPVCSCT 272
                     22.2222....2333303455566677889999***************9999987777777..69****************************** PP

       GAGA_bind 217 GalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvti 300
                     Ga++qCY+WG+GGWqSaCCtt +SvyPLP+stkrrgaRiagrKmS gafkk+LekLaaeGy++snp+DL+++WAkHGtnkfvti
  Vang02g01150.1 273 GAPQQCYRWGSGGWQSACCTTGMSVYPLPMSTKRRGARIAGRKMSIGAFKKVLEKLAAEGYNFSNPIDLRTYWAKHGTNKFVTI 356
                     ***********************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012264.6E-138113356IPR010409GAGA-binding transcriptional activator
PfamPF062172.1E-7113170IPR010409GAGA-binding transcriptional activator
PfamPF062172.3E-88175356IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MGQFADEEKR GMRLNGVQTF LFLCSLHFPF VDAKSPNRSD FCLLLFHAKM DLDHNPEAEI  60
LGTGGFACVH LWDLDNLPRL LVRLYLSSNK GEFLVYIHWI VYLQIVSSFG VVMDGDNGLN  120
IRNWGYYEPA TSFKSHLGLQ LMSSMPEKPL IGGRNAAVLS XTNGAFHHRX IETSSAHQIQ  180
MIPPPELPKE EREVEEEAVV EKATGGSRKK RQSPKVPKSP KAKKSKRGPR VPKNENAPTV  240
HRARVPKKTT EIVINGIDMD ISSIPIPVCS CTGAPQQCYR WGSGGWQSAC CTTGMSVYPL  300
PMSTKRRGAR IAGRKMSIGA FKKVLEKLAA EGYNFSNPID LRTYWAKHGT NKFVTI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g01150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017438573.11e-171PREDICTED: protein BASIC PENTACYSTEINE2-like
RefseqXP_017438574.11e-171PREDICTED: protein BASIC PENTACYSTEINE2-like
SwissprotQ9SKD01e-84BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLA0A371GDL01e-173A0A371GDL0_MUCPR; Protein BASIC PENTACYSTEINE1 (Fragment)
STRINGXP_007152627.11e-157(Phaseolus vulgaris)
STRINGXP_007152630.11e-157(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23703283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.21e-75basic pentacysteine1