PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g01110.1
Common NameLR48_Vigan10g041400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family BBR-BPC
Protein Properties Length: 284aa    MW: 31428.1 Da    PI: 10.3204
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g01110.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind351.51.9e-10712831301
       GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdaki.rernlalsekkaavaerd.........maflqrdkalaernkalverdnkllal 84 
                     md d+  + rn+gyyepa+s+k++lglqlmss++e+     r++ + ls++++a+++r+         m++  rd+++++       +++k++++
  Vang02g01110.1   1 MDGDNGLNiRNWGYYEPATSFKSHLGLQLMSSMPEKPLIGgRNAAV-LSATNGAFHHREigmshatypMEY-VRDAWISS-------QRDKYMNM 86 
                     888888888*************************988766355555.9***********************.99****99.......889***** PP

       GAGA_bind  85 llvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvk 179
                     ++++++        ++ +++t+s++++q+     + ++  +++e+e       eea+ e+ +  ++kkrq++k+pk++kakk k+ ++++k++++
  Vang02g01110.1  87 IPTNHN--------YGGIPETSSAHQIQM-----IPPPELPKEEREVE-----EEAVVEKATGGSRKKRQSPKVPKSPKAKKSKRGPRVPKNENA 163
                     **9997........99************9.....33443443333322.....234445566677888999**************9999987777 PP

       GAGA_bind 180 kesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaa 274
                     +    +r++ +kk++++v+ng+++D+s++P+PvCsCtGa++qCY+WG+GGWqSaCCtt +SvyPLP+stkrrgaRiagrKmS gafkk+LekLaa
  Vang02g01110.1 164 PTV--HRARVPKKTTEIVINGIDMDISSIPIPVCSCTGAPQQCYRWGSGGWQSACCTTGMSVYPLPMSTKRRGARIAGRKMSIGAFKKVLEKLAA 256
                     777..69**************************************************************************************** PP

       GAGA_bind 275 eGydlsnpvDLkdhWAkHGtnkfvtir 301
                     eGy++snp+DL+++WAkHGtnkfvtir
  Vang02g01110.1 257 EGYNFSNPIDLRTYWAKHGTNKFVTIR 283
                     **************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012265.5E-1651283IPR010409GAGA-binding transcriptional activator
PfamPF062171.6E-1121283IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDGDNGLNIR NWGYYEPATS FKSHLGLQLM SSMPEKPLIG GRNAAVLSAT NGAFHHREIG  60
MSHATYPMEY VRDAWISSQR DKYMNMIPTN HNYGGIPETS SAHQIQMIPP PELPKEEREV  120
EEEAVVEKAT GGSRKKRQSP KVPKSPKAKK SKRGPRVPKN ENAPTVHRAR VPKKTTEIVI  180
NGIDMDISSI PIPVCSCTGA PQQCYRWGSG GWQSACCTTG MSVYPLPMST KRRGARIAGR  240
KMSIGAFKKV LEKLAAEGYN FSNPIDLRTY WAKHGTNKFV TIR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g01110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017438573.10.0PREDICTED: protein BASIC PENTACYSTEINE2-like
RefseqXP_017438574.10.0PREDICTED: protein BASIC PENTACYSTEINE2-like
SwissprotQ9SKD01e-95BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLA0A0L9VI050.0A0A0L9VI05_PHAAN; Uncharacterized protein
TrEMBLA0A0S3TC910.0A0A0S3TC91_PHAAN; Uncharacterized protein
STRINGXP_007152627.10.0(Phaseolus vulgaris)
STRINGXP_007152630.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23703283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.37e-90basic pentacysteine 2
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]