PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang02g01110.1 | ||||||||
Common Name | LR48_Vigan10g041400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 284aa MW: 31428.1 Da PI: 10.3204 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 351.5 | 1.9e-107 | 1 | 283 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdaki.rernlalsekkaavaerd.........maflqrdkalaernkalverdnkllal 84 md d+ + rn+gyyepa+s+k++lglqlmss++e+ r++ + ls++++a+++r+ m++ rd+++++ +++k++++ Vang02g01110.1 1 MDGDNGLNiRNWGYYEPATSFKSHLGLQLMSSMPEKPLIGgRNAAV-LSATNGAFHHREigmshatypMEY-VRDAWISS-------QRDKYMNM 86 888888888*************************988766355555.9***********************.99****99.......889***** PP GAGA_bind 85 llvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvk 179 ++++++ ++ +++t+s++++q+ + ++ +++e+e eea+ e+ + ++kkrq++k+pk++kakk k+ ++++k++++ Vang02g01110.1 87 IPTNHN--------YGGIPETSSAHQIQM-----IPPPELPKEEREVE-----EEAVVEKATGGSRKKRQSPKVPKSPKAKKSKRGPRVPKNENA 163 **9997........99************9.....33443443333322.....234445566677888999**************9999987777 PP GAGA_bind 180 kesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaa 274 + +r++ +kk++++v+ng+++D+s++P+PvCsCtGa++qCY+WG+GGWqSaCCtt +SvyPLP+stkrrgaRiagrKmS gafkk+LekLaa Vang02g01110.1 164 PTV--HRARVPKKTTEIVINGIDMDISSIPIPVCSCTGAPQQCYRWGSGGWQSACCTTGMSVYPLPMSTKRRGARIAGRKMSIGAFKKVLEKLAA 256 777..69**************************************************************************************** PP GAGA_bind 275 eGydlsnpvDLkdhWAkHGtnkfvtir 301 eGy++snp+DL+++WAkHGtnkfvtir Vang02g01110.1 257 EGYNFSNPIDLRTYWAKHGTNKFVTIR 283 **************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 5.5E-165 | 1 | 283 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 1.6E-112 | 1 | 283 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MDGDNGLNIR NWGYYEPATS FKSHLGLQLM SSMPEKPLIG GRNAAVLSAT NGAFHHREIG 60 MSHATYPMEY VRDAWISSQR DKYMNMIPTN HNYGGIPETS SAHQIQMIPP PELPKEEREV 120 EEEAVVEKAT GGSRKKRQSP KVPKSPKAKK SKRGPRVPKN ENAPTVHRAR VPKKTTEIVI 180 NGIDMDISSI PIPVCSCTGA PQQCYRWGSG GWQSACCTTG MSVYPLPMST KRRGARIAGR 240 KMSIGAFKKV LEKLAAEGYN FSNPIDLRTY WAKHGTNKFV TIR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang02g01110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017438573.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE2-like | ||||
Refseq | XP_017438574.1 | 0.0 | PREDICTED: protein BASIC PENTACYSTEINE2-like | ||||
Swissprot | Q9SKD0 | 1e-95 | BPC1_ARATH; Protein BASIC PENTACYSTEINE1 | ||||
TrEMBL | A0A0L9VI05 | 0.0 | A0A0L9VI05_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3TC91 | 0.0 | A0A0S3TC91_PHAAN; Uncharacterized protein | ||||
STRING | XP_007152627.1 | 0.0 | (Phaseolus vulgaris) | ||||
STRING | XP_007152630.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2370 | 32 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14685.3 | 7e-90 | basic pentacysteine 2 |
Publications ? help Back to Top | |||
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