PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang02g01050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 382aa MW: 42178 Da PI: 6.3915 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 51.4 | 2.4e-16 | 237 | 267 | 25 | 55 |
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Vang02g01050.1 237 SRATPKSVLELMDVKDLTLAHVKSHLQMYRT 267 79****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-14 | 237 | 268 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.11E-5 | 237 | 268 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.9E-11 | 237 | 267 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MPQNSIFRDQ SSNQIPDLSL HISLPNSAPS SICTGGDSPF DTWPQQADED DYAEGFKSHS 60 DGSIKGCSPY HTDTQLSLAN STTAFTATPS EADSTWRKRN FVRLSHHHGV SDGQIRLING 120 IPLYSNLSSL DNTSTAPSIE RSPTNKFSFP SLYSLPHPPY SANSAPNYSY NGAVGGVAAE 180 PISRFHDITM ENTPRPQQFQ YFDYPQQQQQ FGNSTNFGAS EFSNGFVRSR MLPRQQSRAT 240 PKSVLELMDV KDLTLAHVKS HLQMYRTVKN TDKPAPSSDG DEDFMSITVP NNQNKNFLPN 300 QRGAPNASMD HDMGHTSRNL WANSSTSRGA RIEASAHDLE EIIASQHSGK FSEGNNNYTQ 360 TRSFKDQNPS LEFTLGRSTQ E* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang02g01050.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017438934.1 | 0.0 | PREDICTED: probable transcription factor KAN4 isoform X1 | ||||
TrEMBL | A0A0S3TBV5 | 0.0 | A0A0S3TBV5_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA07G12070.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1756 | 33 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16560.1 | 3e-22 | G2-like family protein |