PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang02g00350.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NAC

Protein Properties

Length: 308aa MW: 34811.3 Da PI: 9.6548

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang02g00350.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	113.9	1.6e-35	66	206	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tksg 81 G++F+Ptd+el+ e+L++kve+k+++ + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ + Vang02g00350.1 66 SGVKFDPTDQELI-EHLEAKVEAKNMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqnecdlqGGET 158 69*********.99*****5553344444434666646******.555666799**************8455555443377 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Vang02g00350.1 159 RWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 206 8********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.63E-37	63	225	IPR003441	NAC domain
PROSITE profile	PS51005	31.371	64	225	IPR003441	NAC domain
Pfam	PF02365	3.7E-16	67	206	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
LVFSMVKPAH ARTRHEMSKI SNLSSVSSSD LIDAKLEEHQ LCGSKQCPGC GHKFEGKPPK 60 KYSHISGVKF DPTDQELIEH LEAKVEAKNM KSHPLIDEFI PTIEGEDGIC YTHPEKLPGV 120 TRDGLSRHFF HRPSKAYTTG TRKRRKIQNE CDLQGGETRW HKTGKTRPVM VNGKQKGCKK 180 ILVLYTNFGK NRKPEKTNWV MHQYHLGQHE EEKEGELVVS KIFYQTQPRQ CNWSDRSATT 240 GEGSGEPNNS SRRDSGSGSC SSKEIATHRD EINNSNNIII SLEEGLRLVW RNSSWVALQL 300 KSKRSHP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang02g00350.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027341691.1	1e-174	NAC domain-containing protein 75-like isoform X1
Refseq	XP_027341692.1	1e-174	NAC domain-containing protein 75-like isoform X1
Swissprot	Q9M0F8	1e-137	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A0B2P1K1	1e-171	A0A0B2P1K1_GLYSO; NAC domain-containing protein 8
TrEMBL	I1J4G0	1e-171	I1J4G0_SOYBN; Uncharacterized protein
STRING	GLYMA01G00880.1	1e-171	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4520	34	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-135	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]