PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0295s00010.1 | ||||||||
Common Name | LR48_Vigan04g084400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 246aa MW: 28471.6 Da PI: 5.5535 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.2 | 1.6e-19 | 35 | 87 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++f++eq++ Le Fe ++++ +++ +LA+ lgL+ rqV +WFqNrRa++k Vang0295s00010.1 35 KRRFSDEQIRSLECIFETESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWK 87 568*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 122.6 | 1.9e-39 | 33 | 125 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 e+krr+s+eq+++LE Fe+e+kLep++K++lar+Lglqprqva+WFqnrRAR+k+k++E++y++Lk++yd+l+++ e+L+ke+e+L+ el++ Vang0295s00010.1 33 ENKRRFSDEQIRSLECIFETESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASRFESLKKEKESLQVELQK 125 58**************************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-19 | 9 | 89 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.91E-18 | 24 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.524 | 29 | 89 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.0E-16 | 32 | 93 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.19E-13 | 35 | 90 | No hit | No description |
Pfam | PF00046 | 6.9E-17 | 35 | 87 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 8.7E-6 | 60 | 69 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 64 | 87 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.7E-6 | 69 | 85 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 8.8E-12 | 89 | 129 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MMEGDENIQA SKGKNDESFA SLEAPRKKNK KIENKRRFSD EQIRSLECIF ETESKLEPRK 60 KMQLARDLGL QPRQVAIWFQ NRRARWKSKR IEQEYRKLKD EYDNLASRFE SLKKEKESLQ 120 VELQKLSDLV VSSHDGGRED KSAKEHSIED GGSGSGYSSW KPEAKPRFSN EGLEERVGVY 180 SDDQNENSIM RSEKSEDKGH QLLRMDDNDH AEMPLASLEK WYSSVDPNGI LDQSCSSSQW 240 LDFWT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0295s00010.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093544 | 0.0 | BT093544.1 Soybean clone JCVI-FLGm-17O6 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017420762.1 | 1e-179 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
TrEMBL | A0A0L9UD54 | 1e-178 | A0A0L9UD54_PHAAN; Uncharacterized protein | ||||
STRING | XP_007136490.1 | 1e-160 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12005 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 6e-43 | homeobox 7 |
Publications ? help Back to Top | |||
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