PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0291s00220.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 382aa    MW: 42767.2 Da    PI: 8.9487
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0291s00220.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.92.7e-16213259455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn+ ErrRRd+iN+++ eL++l+P++      K +Ka++L ++++Y+k+Lq
  Vang0291s00220.1 213 VHNQSERRRRDKINQRMKELQKLVPNS-----SKTDKASMLDEVIQYMKQLQ 259
                       6*************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088818.12209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-18211276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-14213259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-18213266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.10E-16214263No hitNo description
SMARTSM003536.6E-18215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MSQRVPSCDV DDNTISTPTK FPLISTSNFI AHEVPMLGYK LACKKGQPST HQHTPANQTT  60
WEIPRTSGTL ESIVNHGIAK NCHQLLTKDA LVPSFPKQGT VFGACKKGYP GRVESGVVAR  120
GPPTYELTGI KDSSMSGCDT CPRELSVTFN SATMGLPENT TSSVKQCTET TANDYRDSVS  180
HRRSQSEARE EDCKTTGVDR SCESNKRIKA SAVHNQSERR RRDKINQRMK ELQKLVPNSS  240
KTDKASMLDE VIQYMKQLQA HLQMMNWMKM YSSMMLPITM QQQQLKMSML MAQMGMGMRM  300
SKDMAMNMNM NMDMNMNMNM NNMNIPTIAP MLHLPPFMPM ASCADRLLAD LEKSETVDAY  360
SKMAALYNQM YHHPPDSSSK K*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217222ERRRRD
2218223RRRRDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0291s00220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017441702.10.0PREDICTED: transcription factor UNE10-like
TrEMBLA0A0S3SXT20.0A0A0S3SXT2_PHAAN; Uncharacterized protein
STRINGXP_007134726.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.18e-38bHLH family protein