PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0291s00090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 245aa MW: 26629.5 Da PI: 6.3156 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00081 | 160 | 182 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+++F + L H rtH Vang0291s00090.1 160 HECPVCSRVFGSGQALGGHKRTH 182 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.4E-6 | 116 | 133 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.66E-5 | 156 | 183 | No hit | No description |
PROSITE profile | PS50157 | 9.66 | 160 | 182 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.4E-12 | 160 | 182 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 162 | 182 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MMNLPVPPKE SEFVPVQLSF EAESSPSQSS SSFYGLRENP KKSFRFADPE FSFAAETGSV 60 ILQDRESETE SSKNPTRKRS KRAWQLGEPV KKMKLCGNNN KNESASSASD TTAEEAVFRS 120 YQALGGHRAS HKKMKLNSET EFQKPEPEPE HVAVSEKKIH ECPVCSRVFG SGQALGGHKR 180 THVIGSSATH TTATVRTSAT VSVGASVRVG DSLIDLNLPA PVDDDEDISQ FDHSALSDAE 240 FVKE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0291s00090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017441668.1 | 1e-113 | PREDICTED: zinc finger protein ZAT9-like | ||||
TrEMBL | A0A0L9VRM3 | 1e-111 | A0A0L9VRM3_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SXG4 | 1e-111 | A0A0S3SXG4_PHAAN; Uncharacterized protein | ||||
STRING | XP_007134733.1 | 7e-96 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 5e-30 | C2H2-like zinc finger protein |