PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0279s00020.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 498aa    MW: 55298.9 Da    PI: 6.6441
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0279s00020.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.95.7e-063874261054
                       HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       + R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Vang0279s00020.1 387 KVRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 426
                       56888999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.29377426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.11E-12387445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.23E-7387430No hitNo description
SMARTSM003530.0049388432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-9391434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
PFTSQYKYSK LSNPFPFIHV TLSSSQFTQL HKDTHTLITQ TDIHNILSFI KYFHVYVKAE  60
AEEVSAMSDD QFQASGNWWE SARNVRFESG ETQSSSSGLT NMGNYAWQQD MARSSSMDNS  120
ASGGSSVVFH DQKQLQVQPH HDSSATNPTN DHPNLHMMGL GLSSQAMDWN QASLQLRGEK  180
DSEGSFRSML QENLSSPGTT FQQESGNNNI ALSHHQQVHW RPEKLFSAES SSNEFKRGFS  240
LDQTQFSPQY SSGDSTVTSQ GLPCTFQMDY VGNPSSILQG LLGHESNNQQ PHQGGSASFE  300
NRSMNFPYSA TSYGLSSNIE LVPSWSKVPQ FLRASPPKQP PNNQLHFTNN APFWNANSEP  360
AIKDARSSFI SSLQTPFSPS NFDVQSKVRK EKMGDRITAL QQLVSPFGKT DTASVLSEAI  420
EYIKFLHEQV TVLSTPYMKT GAPIQHQQSS GKSKESEGPK QDLRSRGLCL VPVSSTFPVT  480
HEPTVEYWTP TFGGTYR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0279s00020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017432328.10.0PREDICTED: transcription factor bHLH123-like
SwissprotQ8GXT34e-68BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A0L9V3850.0A0A0L9V385_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S9820.0A0A0S3S982_PHAAN; Uncharacterized protein
STRINGXP_007133119.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.16e-67bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]