PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang0273s00020.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 882aa MW: 97000.4 Da PI: 6.1984 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.1 | 3.2e-16 | 94 | 138 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ Vang0273s00020.4 94 RERWTEEEHNRFLEALKLHGRA-WQRIEEHIG-TKTAVQIRSHAQKF 138 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.04E-16 | 88 | 142 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.913 | 89 | 143 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.4E-15 | 92 | 141 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.3E-12 | 93 | 141 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-8 | 94 | 134 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.2E-13 | 94 | 137 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.82E-9 | 96 | 139 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0042754 | Biological Process | negative regulation of circadian rhythm | ||||
GO:0043433 | Biological Process | negative regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 882 aa Download sequence Send to blast |
LNFDGFELLC DYIFSATKQE ESKFAVISKV FVKVKIEIVV IDDVVISFCF YTNCSFPLFA 60 FESGSCSRPV MDAYSSGEEV VVKTRKPYTI TKQRERWTEE EHNRFLEALK LHGRAWQRIE 120 EHIGTKTAVQ IRSHAQKFFT KIADSRAKWY RGLDKPYLGK WLSGADGGGF LFQEHILEEI 180 HGLIDHHDKS AVPTLGTGKF RDTLEKEALV KGVPIGQALD IDIPPPRPKR KPSNPYPRKT 240 RIGTATLHSG AKDGKINLVE FSHDNQALDL EKEPVPEIYD LDEGPTTVKE NKDENCSKVF 300 TDIQEVPCSS LSSANRSSIS MSVPLGNSCV FKETTTSVKE VITPDDKTES FLTVELENGN 360 LEINGGKQAN GTSKNSTLEN SDALLMKLVQ NEKTDGLDSA LTIEGMQGNN QNYPRHVTVH 420 VVDGNLGTCT QNPSQDMLFR DCMFQPIGGA NGQPNLFTNS APSNTRESQN NTARSSAHQS 480 FLPYPPFTQH NQDDYQSFLH MSSTFSNLIV STLLQNPAAH AAASFAATFW PYANPETSAD 540 SPRCSQGGFT SRHIGSPPSV VAIAAATVAA ATAWWAAHGL LPLCAPLHTA FACPPASVTA 600 VPSMNTSETP SLKAEQEKST LQNPPLHDQM MHPEYSEAPQ AQHSASKSLA VISSDSESGD 660 VKLNTSPKAT DHETNEIISE HLDSNKTKGR KQVDRSSCGS NTASSSDVET DALGKDEKGK 720 EEPETPDANH LAIEFSNRRR SICNLTDSWK EVSEEGKLAF QALFSREVLP QSFSPPHALT 780 NKDQMGITND NQQTIDDRNE DLESKKCSSI YKPMQKNPPF VENNVGLLTL GLGQGKLKTR 840 RTGFKPYKRC SMEAKENRVG ASNQGEEKCC KRIRLEGDTS T* |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00119 | DAP | Transfer from AT1G01060 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang0273s00020.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017442031.1 | 0.0 | PREDICTED: protein LHY-like | ||||
Refseq | XP_017442032.1 | 0.0 | PREDICTED: protein LHY-like | ||||
Refseq | XP_017442033.1 | 0.0 | PREDICTED: protein LHY-like | ||||
Refseq | XP_017442034.1 | 0.0 | PREDICTED: protein LHY-like | ||||
Refseq | XP_017442035.1 | 0.0 | PREDICTED: protein LHY-like | ||||
Refseq | XP_017442036.1 | 0.0 | PREDICTED: protein LHY-like | ||||
Refseq | XP_017442037.1 | 0.0 | PREDICTED: protein LHY-like | ||||
Refseq | XP_017442038.1 | 0.0 | PREDICTED: protein LHY-like | ||||
Refseq | XP_017442039.1 | 0.0 | PREDICTED: protein LHY-like | ||||
TrEMBL | A0A0L9VQJ2 | 0.0 | A0A0L9VQJ2_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA07G05410.6 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4860 | 25 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01060.3 | 1e-101 | MYB_related family protein |