PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang0272s00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 220aa MW: 25293.7 Da PI: 10.0022 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102.6 | 5.3e-32 | 32 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lp GfrF+Ptd+el+ +yLkkk+ +++l++ +vi+ +d++++ePw Lp + +++ yfFs+ k ++r++ sg Wk gk+ke+ Vang0272s00060.1 32 LPIGFRFRPTDQELLLHYLKKKAFSQQLPA-SVIPICDVFQSEPWLLPGDL---REKRYFFSNCGK------VNKRSAGSGCWKCVGKEKEIR 114 699***************************.99***************543...4578****9866......467999**************8 PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++e++g+kkt++f kg++++ +t+Wvmhe rl Vang0272s00060.1 115 VCkNNEVIGMKKTMMFCKGSHET--RTRWVMHELRL 148 7548889**********888877..9*******986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.93E-38 | 26 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 36.935 | 32 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-21 | 33 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 220 aa Download sequence Send to blast |
LIESFFRLSV FSFVPKMEGL QEGFVVKGGI KLPIGFRFRP TDQELLLHYL KKKAFSQQLP 60 ASVIPICDVF QSEPWLLPGD LREKRYFFSN CGKVNKRSAG SGCWKCVGKE KEIRVCKNNE 120 VIGMKKTMMF CKGSHETRTR WVMHELRLLT SYPYHQMAVA DFAVYVIFQK RKKMTKASQK 180 RPFCSSKLQR VHDVEASIID FEMEFGHDNN VLPPPSSPC* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-21 | 19 | 148 | 2 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang0272s00060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 1e-129 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017439126.1 | 1e-152 | PREDICTED: NAC domain-containing protein 83 | ||||
TrEMBL | A0A0L9VMI6 | 1e-151 | A0A0L9VMI6_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3T9I0 | 1e-151 | A0A0S3T9I0_PHAAN; Uncharacterized protein | ||||
STRING | XP_007151796.1 | 1e-111 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF704 | 34 | 139 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G13180.1 | 3e-40 | NAC domain containing protein 83 |