PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0268s00300.1 | ||||||||
Common Name | LR48_Vigan03g262800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 483aa MW: 51872.1 Da PI: 7.8408 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 75.2 | 8.8e-24 | 300 | 347 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e ilelm+vk+Ltl+hvkSHLQ+YR+ Vang0268s00300.1 300 PRMRWTSTLHARFVHAVELLGGHE------ILELMDVKDLTLAHVKSHLQMYRT 347 9*********************98......***********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.66E-12 | 297 | 347 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.2E-22 | 298 | 347 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.3E-18 | 300 | 347 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 483 aa Download sequence Send to blast |
MPLEGIFIEP TSTSTPDLSL HISPPSTSSS SSLICNNGTS AGATNYEARN STGTNFPSQA 60 HTELSLGRNF SGGGRGGIEE PPPHNTNSSI NPYYQTQQPR FHHLHHHSNT GNVSKAATAT 120 STTSSSNHLS HINYGVSLLD VSSEGLRPIK GIPVYHNRSF PFLPMEHSGD KDHHAKMCLY 180 HHMPTYPSLS SSCSPLCSSS SSFTSSPAPY FAAAAGAPDP MSYLSSGGST VAAAAAYRAA 240 TATRFNGISG EAFKTHHPLH HHHSSSHYGV GLGGSHEASS GLMRSRFLPK LPTKRSMRAP 300 RMRWTSTLHA RFVHAVELLG GHEILELMDV KDLTLAHVKS HLQMYRTVKT TDKPAASSGL 360 SDGSGEDDMS PMGSSGGMRQ FSDQRSLSDR PVQQDMDYSS ANTLWSNSSS NREPWQQNSS 420 NDINGFRPPI FQSQQISGGH QIQDCDSTQL KNSLSGSANL ECKNPSLEFT LGRPDWNGKG 480 QA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0268s00300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017419208.1 | 0.0 | PREDICTED: transcription repressor KAN1-like | ||||
TrEMBL | A0A0L9U954 | 0.0 | A0A0L9U954_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RZT3 | 0.0 | A0A0S3RZT3_PHAAN; Uncharacterized protein | ||||
STRING | XP_007163357.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1756 | 33 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16560.1 | 3e-51 | G2-like family protein |
Publications ? help Back to Top | |||
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