PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0268s00180.3
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 109aa    MW: 12133.2 Da    PI: 9.5323
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0268s00180.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.81.7e-191953135
              GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                      Cs C+ttkTplWR gp g+ktLCnaCG++yrk+g+
  Vang0268s00180.3 19 CSDCKTTKTPLWRGGPAGPKTLCNACGIRYRKRGS 53
                      ********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.021352IPR000679Zinc finger, GATA-type
SMARTSM004017.1E-151364IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-151553IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577168.08E-141553No hitNo description
PfamPF003203.3E-171953IPR000679Zinc finger, GATA-type
CDDcd002021.13E-131954No hitNo description
PROSITE patternPS0034401944IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MMDLKEWSSP ELNESKKCCS DCKTTKTPLW RGGPAGPKTL CNACGIRYRK RGSCSRKREE  60
VVVLHRTSSV VKKQRWKMLG EEEQAAVCLM ALSCGFFTIP SLTAFQVT*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0268s00180.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-116AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495606.15e-75GATA transcription factor 16
RefseqXP_017417966.14e-75PREDICTED: GATA transcription factor 16-like
SwissprotQ9FJ103e-26GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A0S3RZT85e-74A0A0S3RZT8_PHAAN; Uncharacterized protein
STRINGXP_007163338.17e-62(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.11e-19GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]