PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0268s00180.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 131aa    MW: 14679.2 Da    PI: 9.2791
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0268s00180.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA30.16.7e-101635120
              GATA  1 CsnCgttkTplWRrgpdgnk 20
                      Cs C+ttkTplWR gp g+k
  Vang0268s00180.2 16 CSDCKTTKTPLWRGGPAGPK 35
                      *******************9 PP
2GATA23.29.8e-0860751935
              GATA 19 nktLCnaCGlyyrkkgl 35
                      ++ LCnaCG++yrk+g+
  Vang0268s00180.2 60 QT-LCNACGIRYRKRGS 75
                      44.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.8E-51086IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.1041033IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.24E-71229No hitNo description
Gene3DG3DSA:3.30.50.104.3E-71438IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.49E-91676No hitNo description
PfamPF003201.4E-71636IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.24E-75675No hitNo description
Gene3DG3DSA:3.30.50.102.1E-46074IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
LKEWSSPELN ESKKCCSDCK TTKTPLWRGG PAGPKASCFS SFSSLWPQLL IDFFFILLMQ  60
TLCNACGIRY RKRGSCSRKR EEVVVLHRTS SVVKKQRWKM LGEEEQAAVC LMALSCGFFT  120
IPSLTAFQVT *
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0268s00180.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-158AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495606.11e-66GATA transcription factor 16
RefseqXP_017417966.11e-66PREDICTED: GATA transcription factor 16-like
TrEMBLA0A0S3RZT82e-65A0A0S3RZT8_PHAAN; Uncharacterized protein
STRINGXP_007163338.12e-53(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.17e-14GATA transcription factor 16