PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0268s00180.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 68aa    MW: 7495.83 Da    PI: 10.3786
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0268s00180.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA41.22.3e-131251135
              GATA 11 lWRrgpdgnktLCnaCGlyyrkkgl 35
                      lWR gp g+ktLCnaCG++yrk+g+
  Vang0268s00180.1  1 LWRGGPAGPKTLCNACGIRYRKRGS 25
                      7*********************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.0017139IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.8E-9124IPR013088Zinc finger, NHR/GATA-type
PfamPF003205.8E-11125IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-7127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
LWRGGPAGPK TLCNACGIRY RKRGSCSRKR EKQRWKMLGE EEQAAVCLMA LSCGFFTIPS  60
LTAFQVT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0268s00180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150377e-56AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495606.18e-40GATA transcription factor 16
TrEMBLA0A0S3RZT81e-38A0A0S3RZT8_PHAAN; Uncharacterized protein
TrEMBLA0A1S3TPC32e-38A0A1S3TPC3_VIGRR; GATA transcription factor 16
STRINGGLYMA03G39220.17e-30(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.11e-15GATA transcription factor 16