PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0268s00020.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | TALE | ||||||||
Protein Properties | Length: 309aa MW: 35153.1 Da PI: 5.5044 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.4 | 5.6e-09 | 249 | 283 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 + +yp++ee+ +L++ +gL+++q+ +WF N+R ++ Vang0268s00020.2 249 RWPYPTEEEKVKLSEVTGLDQKQINNWFINQRKRH 283 468*****************************885 PP | |||||||
2 | ELK | 31 | 5.8e-11 | 204 | 224 | 2 | 22 |
ELK 2 LKhqLlrKYsgyLgsLkqEFs 22 LK++LlrKYsg+ ++L++EF+ Vang0268s00020.2 204 LKEMLLRKYSGHFSTLRKEFL 224 9*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.2E-19 | 58 | 102 | IPR005540 | KNOX1 |
Pfam | PF03790 | 9.3E-20 | 60 | 101 | IPR005540 | KNOX1 |
SMART | SM01256 | 5.7E-24 | 105 | 156 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.2E-22 | 110 | 155 | IPR005541 | KNOX2 |
SMART | SM01188 | 8.3E-6 | 203 | 224 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.952 | 203 | 223 | IPR005539 | ELK domain |
Pfam | PF03789 | 2.7E-9 | 204 | 224 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.633 | 223 | 286 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-13 | 225 | 290 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-19 | 225 | 297 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.91E-14 | 226 | 286 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-25 | 228 | 288 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.5E-16 | 243 | 282 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 261 | 284 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MEAVYRLKPL LPCVEDVLRV GNAAVTTTSD MRLGTTANCY LQLEAPEPNV TELDMTDRMV 60 KIQIADHPLY PDLLSAYIEC RKVGAPPELA CLLEEIGRES HRMNVRREKG DGSELDQFME 120 TYCEVLHRYK EELSRPFNEA TLFLGNMESQ LSNLCNGTLI KSPDNNRSDE VGGGASEEEL 180 SCGEMEEVEG RISSSLSCPG DQNLKEMLLR KYSGHFSTLR KEFLKRRKKG KLPKDSKMAL 240 MDWWNTHHRW PYPTEEEKVK LSEVTGLDQK QINNWFINQR KRHWKPTEDM RFAVMDGLSG 300 VGGGAMFI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0268s00020.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095974 | 0.0 | BT095974.1 Soybean clone JCVI-FLGm-20M5 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017416276.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 1 isoform X1 | ||||
Swissprot | Q9FP29 | 1e-86 | KNOS1_ORYSJ; Homeobox protein knotted-1-like 1 | ||||
TrEMBL | A0A0S3S010 | 0.0 | A0A0S3S010_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA03G39041.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.1 | 4e-81 | KNOTTED1-like homeobox gene 6 |
Publications ? help Back to Top | |||
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