PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0263s00150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 411aa MW: 43990.6 Da PI: 10.1189 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.5 | 2.4e-05 | 55 | 77 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Vang0263s00150.1 55 FICEICNKGFQRDQNLQLHRRGH 77 89*******************88 PP | |||||||
2 | zf-C2H2 | 14.3 | 0.00012 | 131 | 153 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Vang0263s00150.1 131 WKCEKCSKKYAVQSDWKAHTKTC 153 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.0E-5 | 54 | 77 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.81E-7 | 54 | 77 | No hit | No description |
Pfam | PF12171 | 4.7E-5 | 55 | 77 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.022 | 55 | 77 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.845 | 55 | 77 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 57 | 77 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 110 | 96 | 126 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.2E-4 | 119 | 152 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.81E-7 | 126 | 151 | No hit | No description |
SMART | SM00355 | 130 | 131 | 151 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MHKFSSLALF GIGRCIKGPP RSNLWVPHRL SDRDRDPDAE VIALSPKTLM ATNRFICEIC 60 NKGFQRDQNL QLHRRGHNLP WKLRQRSNKE VRKKVYICPE QSCVHHDPSR ALGDLTGIKK 120 HFSRKHGEKK WKCEKCSKKY AVQSDWKAHT KTCGTREYKC DCGTLFSSNV NGNNNGTDVG 180 PNYMSSCSSS GLPDIVQMAQ ANGLMGSTSM VSNFGVPAGS NSTSANLSLS SLPIGKRGEA 240 GGTVVDLASI YNSEGPNKNS KPASPMSATA LLQKAAQMGS TRSTNPSIFS GSFGVMNSPS 300 SQTTSLNNNN NGAAAMMLGS NATPATDFTS MTHSPNGFDQ LVMQTNAQLQ SEPVKLKLRS 360 SAVEHNLTRD FLGVSGGGGG GGGPQFLPQE LAKFASMGSP MGLSHFTGNQ * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-22 | 127 | 167 | 3 | 43 | Zinc finger protein JACKDAW |
5b3h_F | 3e-22 | 127 | 167 | 3 | 43 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 81 | 93 | KLRQRSNKEVRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0263s00150.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006604570.1 | 1e-148 | zinc finger protein JACKDAW isoform X2 | ||||
Refseq | XP_028217224.1 | 1e-148 | zinc finger protein JACKDAW-like isoform X2 | ||||
TrEMBL | A0A151RGE1 | 0.0 | A0A151RGE1_CAJCA; Zinc finger protein JACKDAW | ||||
STRING | VIT_08s0040g02100.t01 | 1e-144 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF181 | 34 | 275 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 9e-80 | indeterminate(ID)-domain 2 |