PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0256s00230.1
Common NameLR48_Vigan10g170000
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 157aa    MW: 17107.7 Da    PI: 4.4463
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0256s00230.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.22e-133411556
               AP2 15 WvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                      ++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g+
  Vang0256s00230.1  3 YAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRGP 41
                      89*****965...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.921148IPR001471AP2/ERF domain
SMARTSM003801.5E-19254IPR001471AP2/ERF domain
PfamPF008471.4E-6340IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-22347IPR001471AP2/ERF domain
CDDcd000183.89E-23347No hitNo description
SuperFamilySSF541713.4E-15348IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MGYAAEIRDP STKERHWLGT FDTAEEAALA YDRAARSMRG PRARTNFVYP DTPPGSSVTT  60
ILSPDEHTQT QIQIHQVQED LSSLLNPNLF SQPDPNPQFS LGGLTDTGSS YPFSGFESGD  120
YVVHSPLFSA MPPVSDNVAM GHEGFDLGSS SYFFRN*
Functional Description ? help Back to Top
Source Description
UniProtCell division-promoting factor involved in leaf blade differentiation, inflorescence branching, as well as in carpel and silique shape. Promotes the number of xylem cells. Regulates positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11044410, ECO:0000269|PubMed:12472696, ECO:0000269|PubMed:16339853}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0256s00230.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By imbibition. {ECO:0000269|PubMed:16339853}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-169AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017438298.12e-67PREDICTED: ethylene-responsive transcription factor LEP
SwissprotQ9M6442e-35LEP_ARATH; Ethylene-responsive transcription factor LEP
TrEMBLA0A0L9VLG14e-66A0A0L9VLG1_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T9514e-66A0A0S3T951_PHAAN; Uncharacterized protein
TrEMBLA0A151T0192e-66A0A151T019_CAJCA; Ethylene-responsive transcription factor LEP
STRINGGLYMA02G07460.12e-55(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.16e-25ERF family protein
Publications ? help Back to Top
  1. van der Graaff E,Nussbaumer C,Keller B
    The Arabidopsis thaliana rlp mutations revert the ectopic leaf blade formation conferred by activation tagging of the LEP gene.
    Mol. Genet. Genomics, 2003. 270(3): p. 243-52
    [PMID:12910411]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  4. Chandler JW
    Class VIIIb APETALA2 Ethylene Response Factors in Plant Development.
    Trends Plant Sci., 2018. 23(2): p. 151-162
    [PMID:29074232]