PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0256s00120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 261aa MW: 28801.4 Da PI: 4.5995 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.2 | 5.6e-20 | 186 | 235 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae Aa a++ a++k++g Vang0256s00120.1 186 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAAMAYDVAALKFKG 235 7********.**********94....45************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.6E-33 | 185 | 244 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-23 | 186 | 244 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 25.462 | 186 | 243 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-37 | 186 | 249 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.6E-14 | 186 | 235 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.48E-24 | 186 | 244 | No hit | No description |
PRINTS | PR00367 | 1.1E-11 | 187 | 198 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 209 | 225 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MHPVPSPIEE HVIPPPPTGR SGKGSCSASA IPXDDMDDGS PCLLYILEED EMVLVARGTE 60 FRSATVCHGM QLLEDEVKVS VDEMIIPDAS VPLSTEEIFI VEQVYKSFIT WPKFLVKPVS 120 DPSTQAQQKI PLSEDDPLSS LHLLANILDD NPLEVEYDAN VFGTGSEVPI YLNSQDVRNA 180 DLRKRHYRGV RQRPWGKWAA EIRDPKKAAR VWLGTFDTAE AAAMAYDVAA LKFKGNKAKL 240 NFPERVAVPP PSPETTTTIS S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-27 | 183 | 246 | 2 | 66 | ATERF1 |
3gcc_A | 5e-27 | 183 | 246 | 2 | 66 | ATERF1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0256s00120.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 1e-164 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017420149.1 | 1e-115 | PREDICTED: uncharacterized protein LOC108330149 | ||||
Refseq | XP_017438221.1 | 1e-115 | PREDICTED: uncharacterized protein LOC108344268 | ||||
TrEMBL | A0A0L9VK62 | 1e-103 | A0A0L9VK62_PHAAN; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61890.1 | 5e-32 | ERF family protein |