PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0255s00100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 57aa MW: 6376.41 Da PI: 9.2408 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 37.3 | 8.1e-12 | 2 | 53 | 78 | 126 |
NAM 78 tksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmhey 126 t sg+Wkat dk+++s ++ + lkkt +y+g+a kg k W+mh+ Vang0255s00100.1 2 TGSGFWKATRIDKPLYSLggeDNDCIRLKKTVLYYRGSAGKGIKNYWMMHDL 53 789**************95444445*************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 15.87 | 1 | 56 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.57E-10 | 2 | 53 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 57 aa Download sequence Send to blast |
LTGSGFWKAT RIDKPLYSLG GEDNDCIRLK KTVLYYRGSA GKGIKNYWMM HDLTCC* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0255s00100.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 1e-90 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028247065.1 | 2e-23 | transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9ZVH0 | 1e-15 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A445JFW1 | 4e-22 | A0A445JFW1_GLYSO; Transcription factor JUNGBRUNNEN 1 | ||||
STRING | GLYMA15G40950.1 | 2e-22 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12910.1 | 2e-18 | NAC family protein |
Publications ? help Back to Top | |||
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