PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0255s00010.1 | ||||||||
Common Name | LR48_Vigan11g123900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 298aa MW: 33115.8 Da PI: 7.3398 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00021 | 53 | 75 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Vang0255s00010.1 53 YSCSFCRREFRSAQALGGHMNVH 75 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.05E-6 | 50 | 79 | No hit | No description |
PROSITE profile | PS50157 | 11.219 | 53 | 80 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0098 | 53 | 75 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 55 | 75 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MEQGQCWTKR KYSLSSSLSS PTNPSCGDSW EEQAFAEDAA NSLGGCVWPP RSYSCSFCRR 60 EFRSAQALGG HMNVHRRDRA RLKQQPSSPH NEILCHDLQT QLHMPVQSPL DDYLYPSPVC 120 GLPCKKTKPN SYHDFVASPS SPSHSKALLA PSVNSGNSRD ETVIPFYDSS VLHKISPISN 180 SSESWPCLAE DHRLYSCKFH PQADTKKSSK GDTDDIDGDM ILNSVVCSTH PSLQFESTKE 240 ADHISYKKKK TDASSSPFSP KSSSVDRHHM QTKMFEFSPS SVEELDLELR LGNRSKV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 1e-12 | 48 | 75 | 2 | 29 | superman protein |
2l1o_A | 1e-12 | 48 | 75 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0255s00010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017441950.1 | 0.0 | PREDICTED: uncharacterized protein LOC108347293 | ||||
TrEMBL | A0A0L9VT02 | 0.0 | A0A0L9VT02_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SWU8 | 0.0 | A0A0S3SWU8_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA01G24820.1 | 1e-168 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1776 | 30 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 2e-26 | zinc-finger protein 10 |
Publications ? help Back to Top | |||
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