PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0238s00220.1 | ||||||||
Common Name | LR48_Vigan11g021500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 242aa MW: 27618.4 Da PI: 4.9847 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.6 | 1.1e-18 | 36 | 87 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f+++q++ Le++Fe ++ + +++ +LA+ lgL+ rqV +WFqN+Ra++k Vang0238s00220.1 36 RRFSDDQIKSLETMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWK 87 48*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 119 | 2.6e-38 | 35 | 125 | 3 | 93 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 rr+s++q+k+LE++Fe+e++Lep++K +lar+Lglqprqva+WFqn+RAR+k+kqlE+dy L+++y++l+++ e+L+ke+++L +l++ Vang0238s00220.1 35 TRRFSDDQIKSLETMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKEKQTLLIQLQK 125 79***********************************************************************************999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.8E-18 | 14 | 91 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.086 | 29 | 89 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-15 | 32 | 93 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.4E-16 | 36 | 87 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.45E-13 | 36 | 90 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.3E-19 | 36 | 96 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.8E-5 | 60 | 69 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 64 | 87 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.8E-5 | 69 | 85 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.7E-16 | 89 | 131 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MEYTYSAEGA EAETYTSSST TPSSGIRSKK KSNNTRRFSD DQIKSLETMF ETESRLEPRK 60 KLQLARDLGL QPRQVAIWFQ NKRARWKSKQ LERDYGILQS NYNSLASRFE ALKKEKQTLL 120 IQLQKLNHLM QKPLEAGQSR TQVEAANRMD SESENGGTMK CELEEKPSPS IERSEHAHGV 180 LSDDDASIKV EHFGLEDEHG LLNFAEHADD SLTSPEDWSA FESDGLLGQT TSDYQWWDFW 240 S* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00320 | DAP | Transfer from AT2G46680 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0238s00220.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031175 | 0.0 | KT031175.1 Glycine max clone HN_WYQ_3 homeodomain/HOMEOBOX transcription factor (Glyma07g05800.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017441838.1 | 1e-179 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
Swissprot | P46897 | 1e-64 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | A0A0L9VQF4 | 1e-178 | A0A0L9VQF4_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SZ30 | 1e-178 | A0A0S3SZ30_PHAAN; Uncharacterized protein | ||||
STRING | XP_007135294.1 | 1e-150 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5635 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 2e-66 | homeobox 7 |
Publications ? help Back to Top | |||
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