PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0238s00200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bHLH | ||||||||
Protein Properties | Length: 447aa MW: 49690.1 Da PI: 7.7239 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.6 | 1.9e-12 | 268 | 314 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h e+Er+RR+++N++f Lr ++P+ +++Ka+ L Av YI++L Vang0238s00200.1 268 MNHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVAYINEL 314 5899***********************6.....4***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.5E-30 | 34 | 181 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 3.53E-17 | 265 | 327 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.901 | 265 | 314 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.42E-13 | 268 | 319 | No hit | No description |
Pfam | PF00010 | 6.2E-10 | 269 | 314 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-15 | 269 | 327 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.3E-14 | 271 | 320 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 447 aa Download sequence Send to blast |
MTRERDTRSA SERVLPLPAS ARAEPGKSRS FLMWASHDDN GNLFLSFGEG HFQGTKETSP 60 KFSIPLSTKK FPKTPTTENI NDAEWFYVMS LTRTFPVNNS SSSTSTTPSS LLGKSFALGS 120 VLWLNSKHEL QFYKCERSNE AQLHGIQTLI SIPTQNGVIE MGSYDSIKQN WNLVHHVKSL 180 FQPLPDPLPV QLLNDHTISF ADIGVVAGTQ ETKKRKQTQT PPNNQKDSYV DSEHSDSDCP 240 TLPTTSTPTA SEPKKRGRKP VLGRDTPMNH VEAERQRREK LNHRFYALRA VVPNVSRMDK 300 ASLLSDAVAY INELKAKIEY LESQQQREGN KRVKTEMMDT MDNQSTATTS TIVDQGRPGP 360 GGPCPFGLEI DVKIVGPDAM VRVQSENANH PGARLMGALR DLEFQVHHAS MSCVNDLMLQ 420 DVVINVPDGM RSEESLKSAI LMRLDQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 3e-26 | 262 | 342 | 1 | 83 | Transcription factor MYC2 |
5gnj_B | 3e-26 | 262 | 342 | 1 | 83 | Transcription factor MYC2 |
5gnj_E | 3e-26 | 262 | 342 | 1 | 83 | Transcription factor MYC2 |
5gnj_F | 3e-26 | 262 | 342 | 1 | 83 | Transcription factor MYC2 |
5gnj_G | 3e-26 | 262 | 342 | 1 | 83 | Transcription factor MYC2 |
5gnj_I | 3e-26 | 262 | 342 | 1 | 83 | Transcription factor MYC2 |
5gnj_M | 3e-26 | 262 | 342 | 1 | 83 | Transcription factor MYC2 |
5gnj_N | 3e-26 | 262 | 342 | 1 | 83 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0238s00200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017441588.1 | 0.0 | PREDICTED: transcription factor MYC2-like | ||||
TrEMBL | A0A0L9VR06 | 0.0 | A0A0L9VR06_PHAAN; Uncharacterized protein | ||||
STRING | XP_007135301.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF841 | 34 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17880.1 | 3e-56 | bHLH family protein |